Week 4

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GOAL: Work on coding REMD on WorkQueue

OUTCOME: This portion of coding revolves around implementing NAMD (the molecular dynamic portion of the software package) on WorkQueue.

CHALLENGES: The primary challenge I am having revolves around getting the WorkQueue "worker" to "send the task" for completion. I'm also having an issue with regards to which folder WorkQueue should be implementing NAMD; should I put all of the required files in the same folder as WorkQueue and implement from there or should I have WorkQueue implement NAMD from a separate folder? Decisions, decisions