Flat profile:

Each sample counts as 0.01 seconds.
  %   cumulative   self              self     total           
 time   seconds   seconds    calls  us/call  us/call  name    
 36.26     47.77    47.77  7609126     6.28    10.79  Reaction::react(double, Material &)
 31.10     88.75    40.98   362445   113.07   341.11  Organism::live(void)
 26.08    123.11    34.36 20561649     1.67     1.67  Reaction::equilibriumP(Material &)
  3.80    128.12     5.01   278418    17.99    17.99  Organism::calculateEfficiencies(void)
  0.68    129.01     0.89   277573     3.21    21.20  Organism::calculateUptakeRates(void)
  0.53    129.71     0.70    36670    19.09    19.09  Material::totalDecompose(void)
  0.34    130.16     0.45      998   450.90  1157.75  Location::decompose(void)
  0.24    130.47     0.31                             yylex
  0.16    130.68     0.21  1301093     0.16     0.16  z1_Rnd::Gen1(void)
  0.15    130.88     0.20   710414     0.28     0.28  BiotaIterator::getNext(void)
  0.15    131.08     0.20    72000     2.78     2.78  BaseList::length(void)
  0.13    131.25     0.17      999   170.17  6269.61  Location::updateShare(void)
  0.08    131.35     0.10   147708     0.68     0.68  PeptideString::match(PeptideString *, int)
  0.05    131.41     0.06   273467     0.22     0.22  BaseList::prepend(void *)
  0.04    131.46     0.05        2 25000.00 32449.22  Location::biomassSummary(int)
  0.03    131.50     0.04   110852     0.36     0.52  Literator::getOne(void)
  0.02    131.53     0.03   264387     0.11     0.15  Location::removeBiota(Organism *)
  0.02    131.56     0.03     3191     9.40     9.40  Material::Material(PeptideString const *)
  0.02    131.59     0.03     2666    11.25    11.75  PeptideString::mutateOnce(mutret_t &)
  0.02    131.62     0.03     1583    18.95    18.95  Material::Material(char const *)
  0.02    131.64     0.02    71928     0.28     0.28  Location::calculateModifier(int)
  0.02    131.66     0.02     1796    11.14    11.14  Organism::dltraits(ostream &)
  0.01    131.67     0.01   272998     0.04     0.04  BaseList::remove(void *)
  0.01    131.68     0.01    21798     0.46     0.46  Vector<double>::operator[](int) const
  0.01    131.69     0.01     2238     4.47    49.15  Protopeptide::lookup(PeptideString *, short *, int *)
  0.01    131.70     0.01     2048     4.88     4.88  Material::datalog(ostream &)
  0.01    131.71     0.01     1582     6.32   127.24  Chromosome::Chromosome(Chromosome &, double)
  0.01    131.72     0.01     1001     9.99   109.99  Location::WorldPop(void)
  0.01    131.73     0.01      999    10.01    10.01  Literator::reset(void)
  0.01    131.74     0.01                             main
  0.01    131.75     0.01                             yyparse
  0.00    131.75     0.00    35964     0.00     0.56  Location::updateEnv(void)
  0.00    131.75     0.00    21798     0.00     0.00  Vector<double>::operator[](int)
  0.00    131.75     0.00     2769     0.00     0.16  PeptideString::rChar(void)
  0.00    131.75     0.00     2258     0.00     0.00  PeptideString::subString(int, int) const
  0.00    131.75     0.00     2239     0.00    58.53  Gene::Gene(PeptideString *, int, int, int, int)
  0.00    131.75     0.00     2238     0.00     0.00  PeptideString::skipGene(char *, int)
  0.00    131.75     0.00     1998     0.00     0.00  Literator::Literator(void)
  0.00    131.75     0.00     1796     0.00    16.02  Organism::datalog(ostream &)
  0.00    131.75     0.00     1775     0.00     0.00  Material::~Material(void)
  0.00    131.75     0.00      737     0.00     0.00  Material::Material(double)
  0.00    131.75     0.00      737     0.00     0.00  Vector<double>::operator=(Vector<double> const &)
  0.00    131.75     0.00      737     0.00     0.00  Chromosome::nextGeneOffset(int)
  0.00    131.75     0.00      519     0.00     0.00  Material::Material(Material &)
  0.00    131.75     0.00      519     0.00     0.00  Material::operator+=(Material const &)
  0.00    131.75     0.00      519     0.00     0.00  Material::operator+(Material const &) const
  0.00    131.75     0.00      434     0.00     0.00  Organism::~Organism(void)
  0.00    131.75     0.00      434     0.00    13.93  Organism::die(void)
  0.00    131.75     0.00      252     0.00     0.00  EnVar::datalog(ostream &)
  0.00    131.75     0.00      108     0.00   166.43  Organism::Organism(Chromosome &, Material &, int, int, char)
  0.00    131.75     0.00       31     0.00     0.00  PeptideString::nextGene(char **)
  0.00    131.75     0.00       20     0.00     0.00  PeptideString::prependGene(PeptideString *)
  0.00    131.75     0.00        8     0.00     0.00  operator<<(ostream &, Date const &)
  0.00    131.75     0.00        8     0.00     0.00  PeptideString::replaceGene(int, int, PeptideString *)
  0.00    131.75     0.00        7     0.00     0.00  operator<<(ostream &, Material const &)
  0.00    131.75     0.00        7     0.00  4368.08  datalog(int)
  0.00    131.75     0.00        2     0.00     0.00  HandleINT
  0.00    131.75     0.00        2     0.00     0.00  __static_initialization_and_destruction_0
  0.00    131.75     0.00        2     0.00    19.09  Location::resourceSummary(int)
  0.00    131.75     0.00        1     0.00     0.00  z1_Rnd::~z1_Rnd(void)
  0.00    131.75     0.00        1     0.00  1833.27  Chromosome::Chromosome(char *)
  0.00    131.75     0.00        1     0.00     0.00  operator<<(ostream &, PeptideString const &)
  0.00    131.75     0.00        1     0.00     0.00  __static_initialization_and_destruction_0
  0.00    131.75     0.00        1     0.00     0.00  __static_initialization_and_destruction_0
  0.00    131.75     0.00        1     0.00 32578.30  epilogue(char *)
  0.00    131.75     0.00        1     0.00     0.00  PeptideString::geneCount(void) const
  0.00    131.75     0.00        1     0.00     0.00  PeptideString::init(int)
  0.00    131.75     0.00        1     0.00     0.00  PeptideString::insert(PeptideString *, int)
  0.00    131.75     0.00        1     0.00 19870.11  parse(char *, ostream &)
  0.00    131.75     0.00        1     0.00    19.09  Material::partialDecompose(double)
  0.00    131.75     0.00        1     0.00     0.00  PeptideString::split(int)

 %         the percentage of the total running time of the
time       program used by this function.

cumulative a running sum of the number of seconds accounted
 seconds   for by this function and those listed above it.

 self      the number of seconds accounted for by this
seconds    function alone.  This is the major sort for this
           listing.

calls      the number of times this function was invoked, if
           this function is profiled, else blank.
 
 self      the average number of milliseconds spent in this
ms/call    function per call, if this function is profiled,
	   else blank.

 total     the average number of milliseconds spent in this
ms/call    function and its descendents per call, if this 
	   function is profiled, else blank.

name       the name of the function.  This is the minor sort
           for this listing. The index shows the location of
	   the function in the gprof listing. If the index is
	   in parenthesis it shows where it would appear in
	   the gprof listing if it were to be printed.

		     Call graph (explanation follows)


granularity: each sample hit covers 4 byte(s) for 0.01% of 131.75 seconds

index % time    self  children    called     name
                                                 <spontaneous>
[1]     99.8    0.01  131.42                 main [1]
               40.98   82.65  362445/362445      Organism::live(void) [2]
                0.17    6.09     999/999         Location::updateShare(void) [5]
                0.45    0.71     998/998         Location::decompose(void) [8]
                0.11    0.00  398409/710414      BiotaIterator::getNext(void) [13]
                0.01    0.10    1000/1001        Location::WorldPop(void) [16]
                0.00    0.03       1/1           epilogue(char *) [23]
                0.03    0.01       1/2           Location::biomassSummary(int) [19]
                0.00    0.03       7/7           datalog(int) [25]
                0.00    0.02       1/1           parse(char *, ostream &) [32]
                0.01    0.01   36963/110852      Literator::getOne(void) [21]
                0.01    0.00     999/999         Literator::reset(void) [36]
                0.00    0.00       1/2           Location::resourceSummary(int) [42]
                0.00    0.00       1/1           PeptideString::init(int) [53]
                0.00    0.00       1/7           operator<<(ostream &, Material const &) [136]
                0.00    0.00       1/1998        Literator::Literator(void) [127]
-----------------------------------------------
               40.98   82.65  362445/362445      main [1]
[2]     93.8   40.98   82.65  362445         Organism::live(void) [2]
               47.77   34.36 7609126/7609126     Reaction::react(double, Material &) [3]
                0.19    0.00 1177319/1301093     z1_Rnd::Gen1(void) [11]
                0.01    0.18    1474/1582        Chromosome::Chromosome(Chromosome &, double) [12]
                0.06    0.00  264690/273467      BaseList::prepend(void *) [20]
                0.03    0.01  263953/264387      Location::removeBiota(Organism *) [22]
                0.00    0.01     737/277573      Organism::calculateUptakeRates(void) [6]
                0.01    0.00     737/36670       Material::totalDecompose(void) [9]
                0.01    0.00     737/278418      Organism::calculateEfficiencies(void) [7]
                0.00    0.01     434/434         Organism::die(void) [39]
                0.00    0.00     737/737         Material::Material(double) [129]
                0.00    0.00     737/737         Vector<double>::operator=(Vector<double> const &) [130]
                0.00    0.00     737/1775        Material::~Material(void) [128]
                0.00    0.00     737/737         Chromosome::nextGeneOffset(int) [46]
-----------------------------------------------
               47.77   34.36 7609126/7609126     Organism::live(void) [2]
[3]     62.3   47.77   34.36 7609126         Reaction::react(double, Material &) [3]
               34.36    0.00 20561649/20561649     Reaction::equilibriumP(Material &) [4]
-----------------------------------------------
               34.36    0.00 20561649/20561649     Reaction::react(double, Material &) [3]
[4]     26.1   34.36    0.00 20561649         Reaction::equilibriumP(Material &) [4]
-----------------------------------------------
                0.17    6.09     999/999         main [1]
[5]      4.8    0.17    6.09     999         Location::updateShare(void) [5]
                0.89    4.98  276728/277573      Organism::calculateUptakeRates(void) [6]
                0.10    0.00   35964/72000       BaseList::length(void) [14]
                0.09    0.00  309957/710414      BiotaIterator::getNext(void) [13]
                0.00    0.02   35964/35964       Location::updateEnv(void) [30]
                0.01    0.01   36963/110852      Literator::getOne(void) [21]
                0.00    0.00     999/1998        Literator::Literator(void) [127]
-----------------------------------------------
                0.00    0.00     108/277573      Organism::Organism(Chromosome &, Material &, int, int, char) [33]
                0.00    0.01     737/277573      Organism::live(void) [2]
                0.89    4.98  276728/277573      Location::updateShare(void) [5]
[6]      4.5    0.89    4.99  277573         Organism::calculateUptakeRates(void) [6]
                4.99    0.00  277573/278418      Organism::calculateEfficiencies(void) [7]
-----------------------------------------------
                0.00    0.00     108/278418      Organism::Organism(Chromosome &, Material &, int, int, char) [33]
                0.01    0.00     737/278418      Organism::live(void) [2]
                4.99    0.00  277573/278418      Organism::calculateUptakeRates(void) [6]
[7]      3.8    5.01    0.00  278418         Organism::calculateEfficiencies(void) [7]
-----------------------------------------------
                0.45    0.71     998/998         main [1]
[8]      0.9    0.45    0.71     998         Location::decompose(void) [8]
                0.69    0.00   35928/36670       Material::totalDecompose(void) [9]
                0.01    0.01   36926/110852      Literator::getOne(void) [21]
                0.00    0.00    8611/272998      BaseList::remove(void *) [34]
                0.00    0.00     998/1998        Literator::Literator(void) [127]
-----------------------------------------------
                0.00    0.00       1/36670       Location::biomassSummary(int) [19]
                0.00    0.00       1/36670       parse(char *, ostream &) [32]
                0.00    0.00       1/36670       Material::partialDecompose(double) [43]
                0.00    0.00       2/36670       Location::resourceSummary(int) [42]
                0.01    0.00     737/36670       Organism::live(void) [2]
                0.69    0.00   35928/36670       Location::decompose(void) [8]
[9]      0.5    0.70    0.00   36670         Material::totalDecompose(void) [9]
-----------------------------------------------
                                                 <spontaneous>
[10]     0.2    0.31    0.00                 yylex [10]
-----------------------------------------------
                0.00    0.00    2769/1301093     PeptideString::rChar(void) [41]
                0.00    0.00    4774/1301093     Chromosome::Chromosome(Chromosome &, double) [12]
                0.00    0.00    5379/1301093     PeptideString::mutateOnce(mutret_t &) [24]
                0.02    0.00  110852/1301093     Literator::getOne(void) [21]
                0.19    0.00 1177319/1301093     Organism::live(void) [2]
[11]     0.2    0.21    0.00 1301093         z1_Rnd::Gen1(void) [11]
-----------------------------------------------
                0.00    0.01     108/1582        Organism::Organism(Chromosome &, Material &, int, int, char) [33]
                0.01    0.18    1474/1582        Organism::live(void) [2]
[12]     0.2    0.01    0.19    1582         Chromosome::Chromosome(Chromosome &, double) [12]
                0.00    0.13    2208/2239        Gene::Gene(PeptideString *, int, int, int, int) [15]
                0.03    0.00    2666/2666        PeptideString::mutateOnce(mutret_t &) [24]
                0.03    0.00    1582/1583        Material::Material(char const *) [27]
                0.00    0.00    4774/1301093     z1_Rnd::Gen1(void) [11]
                0.00    0.00      20/2258        PeptideString::subString(int, int) const [44]
                0.00    0.00      20/20          PeptideString::prependGene(PeptideString *) [49]
                0.00    0.00       8/8           PeptideString::replaceGene(int, int, PeptideString *) [50]
                0.00    0.00       1/1           PeptideString::split(int) [55]
                0.00    0.00       1/1           PeptideString::insert(PeptideString *, int) [54]
-----------------------------------------------
                0.00    0.00    2048/710414      datalog(int) [25]
                0.09    0.00  309957/710414      Location::updateShare(void) [5]
                0.11    0.00  398409/710414      main [1]
[13]     0.2    0.20    0.00  710414         BiotaIterator::getNext(void) [13]
-----------------------------------------------
                0.10    0.00   35964/72000       Location::updateShare(void) [5]
                0.10    0.00   36036/72000       Location::WorldPop(void) [16]
[14]     0.2    0.20    0.00   72000         BaseList::length(void) [14]
-----------------------------------------------
                0.00    0.00      31/2239        Chromosome::Chromosome(char *) [40]
                0.00    0.13    2208/2239        Chromosome::Chromosome(Chromosome &, double) [12]
[15]     0.1    0.00    0.13    2239         Gene::Gene(PeptideString *, int, int, int, int) [15]
                0.01    0.10    2238/2238        Protopeptide::lookup(PeptideString *, short *, int *) [17]
                0.02    0.00    2238/3191        Material::Material(PeptideString const *) [26]
                0.00    0.00    2238/2258        PeptideString::subString(int, int) const [44]
-----------------------------------------------
                0.00    0.00       1/1001        epilogue(char *) [23]
                0.01    0.10    1000/1001        main [1]
[16]     0.1    0.01    0.10    1001         Location::WorldPop(void) [16]
                0.10    0.00   36036/72000       BaseList::length(void) [14]
-----------------------------------------------
                0.01    0.10    2238/2238        Gene::Gene(PeptideString *, int, int, int, int) [15]
[17]     0.1    0.01    0.10    2238         Protopeptide::lookup(PeptideString *, short *, int *) [17]
                0.10    0.00  147708/147708      PeptideString::match(PeptideString *, int) [18]
                0.00    0.00    2238/2238        PeptideString::skipGene(char *, int) [45]
-----------------------------------------------
                0.10    0.00  147708/147708      Protopeptide::lookup(PeptideString *, short *, int *) [17]
[18]     0.1    0.10    0.00  147708         PeptideString::match(PeptideString *, int) [18]
-----------------------------------------------
                0.03    0.01       1/2           epilogue(char *) [23]
                0.03    0.01       1/2           main [1]
[19]     0.0    0.05    0.01       2         Location::biomassSummary(int) [19]
                0.01    0.00   21798/21798       Vector<double>::operator[](int) const [38]
                0.00    0.00     519/3191        Material::Material(PeptideString const *) [26]
                0.00    0.00       1/36670       Material::totalDecompose(void) [9]
                0.00    0.00   21798/21798       Vector<double>::operator[](int) [126]
                0.00    0.00    1038/1775        Material::~Material(void) [128]
                0.00    0.00     519/519         Material::operator+(Material const &) const [133]
                0.00    0.00     519/519         Material::operator+=(Material const &) [132]
                0.00    0.00     519/519         Material::Material(Material &) [131]
-----------------------------------------------
                0.00    0.00     108/273467      parse(char *, ostream &) [32]
                0.00    0.00    8669/273467      Organism::die(void) [39]
                0.06    0.00  264690/273467      Organism::live(void) [2]
[20]     0.0    0.06    0.00  273467         BaseList::prepend(void *) [20]
-----------------------------------------------
                0.01    0.01   36926/110852      Location::decompose(void) [8]
                0.01    0.01   36963/110852      Location::updateShare(void) [5]
                0.01    0.01   36963/110852      main [1]
[21]     0.0    0.04    0.02  110852         Literator::getOne(void) [21]
                0.02    0.00  110852/1301093     z1_Rnd::Gen1(void) [11]
-----------------------------------------------
                0.00    0.00     434/264387      Organism::die(void) [39]
                0.03    0.01  263953/264387      Organism::live(void) [2]
[22]     0.0    0.03    0.01  264387         Location::removeBiota(Organism *) [22]
                0.01    0.00  264387/272998      BaseList::remove(void *) [34]
-----------------------------------------------
                0.00    0.03       1/1           main [1]
[23]     0.0    0.00    0.03       1         epilogue(char *) [23]
                0.03    0.01       1/2           Location::biomassSummary(int) [19]
                0.00    0.00       1/1001        Location::WorldPop(void) [16]
                0.00    0.00       1/2           Location::resourceSummary(int) [42]
                0.00    0.00       2/7           operator<<(ostream &, Material const &) [136]
                0.00    0.00       1/8           operator<<(ostream &, Date const &) [135]
-----------------------------------------------
                0.03    0.00    2666/2666        Chromosome::Chromosome(Chromosome &, double) [12]
[24]     0.0    0.03    0.00    2666         PeptideString::mutateOnce(mutret_t &) [24]
                0.00    0.00    5379/1301093     z1_Rnd::Gen1(void) [11]
                0.00    0.00    2769/2769        PeptideString::rChar(void) [41]
-----------------------------------------------
                0.00    0.03       7/7           main [1]
[25]     0.0    0.00    0.03       7         datalog(int) [25]
                0.00    0.03    1796/1796        Organism::datalog(ostream &) [28]
                0.00    0.00     252/2048        Material::datalog(ostream &) [35]
                0.00    0.00    2048/710414      BiotaIterator::getNext(void) [13]
                0.00    0.00     252/252         EnVar::datalog(ostream &) [47]
                0.00    0.00       7/8           operator<<(ostream &, Date const &) [135]
-----------------------------------------------
                0.00    0.00     434/3191        Organism::die(void) [39]
                0.00    0.00     519/3191        Location::biomassSummary(int) [19]
                0.02    0.00    2238/3191        Gene::Gene(PeptideString *, int, int, int, int) [15]
[26]     0.0    0.03    0.00    3191         Material::Material(PeptideString const *) [26]
-----------------------------------------------
                0.00    0.00       1/1583        Chromosome::Chromosome(char *) [40]
                0.03    0.00    1582/1583        Chromosome::Chromosome(Chromosome &, double) [12]
[27]     0.0    0.03    0.00    1583         Material::Material(char const *) [27]
-----------------------------------------------
                0.00    0.03    1796/1796        datalog(int) [25]
[28]     0.0    0.00    0.03    1796         Organism::datalog(ostream &) [28]
                0.02    0.00    1796/1796        Organism::dltraits(ostream &) [31]
                0.01    0.00    1796/2048        Material::datalog(ostream &) [35]
-----------------------------------------------
                0.02    0.00   71928/71928       Location::updateEnv(void) [30]
[29]     0.0    0.02    0.00   71928         Location::calculateModifier(int) [29]
-----------------------------------------------
                0.00    0.02   35964/35964       Location::updateShare(void) [5]
[30]     0.0    0.00    0.02   35964         Location::updateEnv(void) [30]
                0.02    0.00   71928/71928       Location::calculateModifier(int) [29]
-----------------------------------------------
                0.02    0.00    1796/1796        Organism::datalog(ostream &) [28]
[31]     0.0    0.02    0.00    1796         Organism::dltraits(ostream &) [31]
-----------------------------------------------
                0.00    0.02       1/1           main [1]
[32]     0.0    0.00    0.02       1         parse(char *, ostream &) [32]
                0.00    0.02     108/108         Organism::Organism(Chromosome &, Material &, int, int, char) [33]
                0.00    0.00       1/1           Chromosome::Chromosome(char *) [40]
                0.00    0.00     108/273467      BaseList::prepend(void *) [20]
                0.00    0.00       1/36670       Material::totalDecompose(void) [9]
                0.00    0.00       1/1           Material::partialDecompose(double) [43]
                0.00    0.00      31/31          PeptideString::nextGene(char **) [48]
                0.00    0.00       4/7           operator<<(ostream &, Material const &) [136]
-----------------------------------------------
                0.00    0.02     108/108         parse(char *, ostream &) [32]
[33]     0.0    0.00    0.02     108         Organism::Organism(Chromosome &, Material &, int, int, char) [33]
                0.00    0.01     108/1582        Chromosome::Chromosome(Chromosome &, double) [12]
                0.00    0.00     108/277573      Organism::calculateUptakeRates(void) [6]
                0.00    0.00     108/278418      Organism::calculateEfficiencies(void) [7]
-----------------------------------------------
                0.00    0.00    8611/272998      Location::decompose(void) [8]
                0.01    0.00  264387/272998      Location::removeBiota(Organism *) [22]
[34]     0.0    0.01    0.00  272998         BaseList::remove(void *) [34]
-----------------------------------------------
                0.00    0.00     252/2048        datalog(int) [25]
                0.01    0.00    1796/2048        Organism::datalog(ostream &) [28]
[35]     0.0    0.01    0.00    2048         Material::datalog(ostream &) [35]
-----------------------------------------------
                0.01    0.00     999/999         main [1]
[36]     0.0    0.01    0.00     999         Literator::reset(void) [36]
-----------------------------------------------
                                                 <spontaneous>
[37]     0.0    0.01    0.00                 yyparse [37]
-----------------------------------------------
                0.01    0.00   21798/21798       Location::biomassSummary(int) [19]
[38]     0.0    0.01    0.00   21798         Vector<double>::operator[](int) const [38]
-----------------------------------------------
                0.00    0.01     434/434         Organism::live(void) [2]
[39]     0.0    0.00    0.01     434         Organism::die(void) [39]
                0.00    0.00     434/3191        Material::Material(PeptideString const *) [26]
                0.00    0.00    8669/273467      BaseList::prepend(void *) [20]
                0.00    0.00     434/264387      Location::removeBiota(Organism *) [22]
                0.00    0.00     434/434         Organism::~Organism(void) [134]
-----------------------------------------------
                0.00    0.00       1/1           parse(char *, ostream &) [32]
[40]     0.0    0.00    0.00       1         Chromosome::Chromosome(char *) [40]
                0.00    0.00      31/2239        Gene::Gene(PeptideString *, int, int, int, int) [15]
                0.00    0.00       1/1583        Material::Material(char const *) [27]
                0.00    0.00       1/1           PeptideString::geneCount(void) const [52]
-----------------------------------------------
                0.00    0.00    2769/2769        PeptideString::mutateOnce(mutret_t &) [24]
[41]     0.0    0.00    0.00    2769         PeptideString::rChar(void) [41]
                0.00    0.00    2769/1301093     z1_Rnd::Gen1(void) [11]
-----------------------------------------------
                0.00    0.00       1/2           epilogue(char *) [23]
                0.00    0.00       1/2           main [1]
[42]     0.0    0.00    0.00       2         Location::resourceSummary(int) [42]
                0.00    0.00       2/36670       Material::totalDecompose(void) [9]
-----------------------------------------------
                0.00    0.00       1/1           parse(char *, ostream &) [32]
[43]     0.0    0.00    0.00       1         Material::partialDecompose(double) [43]
                0.00    0.00       1/36670       Material::totalDecompose(void) [9]
-----------------------------------------------
                0.00    0.00      20/2258        Chromosome::Chromosome(Chromosome &, double) [12]
                0.00    0.00    2238/2258        Gene::Gene(PeptideString *, int, int, int, int) [15]
[44]     0.0    0.00    0.00    2258         PeptideString::subString(int, int) const [44]
-----------------------------------------------
                0.00    0.00    2238/2238        Protopeptide::lookup(PeptideString *, short *, int *) [17]
[45]     0.0    0.00    0.00    2238         PeptideString::skipGene(char *, int) [45]
-----------------------------------------------
                0.00    0.00     737/737         Organism::live(void) [2]
[46]     0.0    0.00    0.00     737         Chromosome::nextGeneOffset(int) [46]
-----------------------------------------------
                0.00    0.00     252/252         datalog(int) [25]
[47]     0.0    0.00    0.00     252         EnVar::datalog(ostream &) [47]
-----------------------------------------------
                0.00    0.00      31/31          parse(char *, ostream &) [32]
[48]     0.0    0.00    0.00      31         PeptideString::nextGene(char **) [48]
-----------------------------------------------
                0.00    0.00      20/20          Chromosome::Chromosome(Chromosome &, double) [12]
[49]     0.0    0.00    0.00      20         PeptideString::prependGene(PeptideString *) [49]
-----------------------------------------------
                0.00    0.00       8/8           Chromosome::Chromosome(Chromosome &, double) [12]
[50]     0.0    0.00    0.00       8         PeptideString::replaceGene(int, int, PeptideString *) [50]
-----------------------------------------------
                0.00    0.00       1/2           __do_global_dtors_aux [149]
                0.00    0.00       1/2           __do_global_ctors_aux [148]
[51]     0.0    0.00    0.00       2         HandleINT [51]
                0.00    0.00       2/2           __static_initialization_and_destruction_0 [137]
-----------------------------------------------
                0.00    0.00       1/1           Chromosome::Chromosome(char *) [40]
[52]     0.0    0.00    0.00       1         PeptideString::geneCount(void) const [52]
-----------------------------------------------
                0.00    0.00       1/1           main [1]
[53]     0.0    0.00    0.00       1         PeptideString::init(int) [53]
-----------------------------------------------
                0.00    0.00       1/1           Chromosome::Chromosome(Chromosome &, double) [12]
[54]     0.0    0.00    0.00       1         PeptideString::insert(PeptideString *, int) [54]
-----------------------------------------------
                0.00    0.00       1/1           Chromosome::Chromosome(Chromosome &, double) [12]
[55]     0.0    0.00    0.00       1         PeptideString::split(int) [55]
-----------------------------------------------
                0.00    0.00   21798/21798       Location::biomassSummary(int) [19]
[126]    0.0    0.00    0.00   21798         Vector<double>::operator[](int) [126]
-----------------------------------------------
                0.00    0.00       1/1998        main [1]
                0.00    0.00     998/1998        Location::decompose(void) [8]
                0.00    0.00     999/1998        Location::updateShare(void) [5]
[127]    0.0    0.00    0.00    1998         Literator::Literator(void) [127]
-----------------------------------------------
                0.00    0.00     737/1775        Organism::live(void) [2]
                0.00    0.00    1038/1775        Location::biomassSummary(int) [19]
[128]    0.0    0.00    0.00    1775         Material::~Material(void) [128]
-----------------------------------------------
                0.00    0.00     737/737         Organism::live(void) [2]
[129]    0.0    0.00    0.00     737         Material::Material(double) [129]
-----------------------------------------------
                0.00    0.00     737/737         Organism::live(void) [2]
[130]    0.0    0.00    0.00     737         Vector<double>::operator=(Vector<double> const &) [130]
-----------------------------------------------
                0.00    0.00     519/519         Location::biomassSummary(int) [19]
[131]    0.0    0.00    0.00     519         Material::Material(Material &) [131]
-----------------------------------------------
                0.00    0.00     519/519         Location::biomassSummary(int) [19]
[132]    0.0    0.00    0.00     519         Material::operator+=(Material const &) [132]
-----------------------------------------------
                0.00    0.00     519/519         Location::biomassSummary(int) [19]
[133]    0.0    0.00    0.00     519         Material::operator+(Material const &) const [133]
-----------------------------------------------
                0.00    0.00     434/434         Organism::die(void) [39]
[134]    0.0    0.00    0.00     434         Organism::~Organism(void) [134]
-----------------------------------------------
                0.00    0.00       1/8           epilogue(char *) [23]
                0.00    0.00       7/8           datalog(int) [25]
[135]    0.0    0.00    0.00       8         operator<<(ostream &, Date const &) [135]
-----------------------------------------------
                0.00    0.00       1/7           main [1]
                0.00    0.00       2/7           epilogue(char *) [23]
                0.00    0.00       4/7           parse(char *, ostream &) [32]
[136]    0.0    0.00    0.00       7         operator<<(ostream &, Material const &) [136]
-----------------------------------------------
                0.00    0.00       2/2           HandleINT [51]
[137]    0.0    0.00    0.00       2         __static_initialization_and_destruction_0 [137]
-----------------------------------------------
                0.00    0.00       1/1           __do_global_ctors_aux [148]
[138]    0.0    0.00    0.00       1         z1_Rnd::~z1_Rnd(void) [138]
-----------------------------------------------
                0.00    0.00       1/1           __do_global_ctors_aux [148]
[139]    0.0    0.00    0.00       1         operator<<(ostream &, PeptideString const &) [139]
                0.00    0.00       1/1           __static_initialization_and_destruction_0 [140]
-----------------------------------------------
                0.00    0.00       1/1           operator<<(ostream &, PeptideString const &) [139]
[140]    0.0    0.00    0.00       1         __static_initialization_and_destruction_0 [140]
-----------------------------------------------
                0.00    0.00       1/1           __do_global_ctors_aux [148]
[141]    0.0    0.00    0.00       1         __static_initialization_and_destruction_0 [141]
-----------------------------------------------

 This table describes the call tree of the program, and was sorted by
 the total amount of time spent in each function and its children.

 Each entry in this table consists of several lines.  The line with the
 index number at the left hand margin lists the current function.
 The lines above it list the functions that called this function,
 and the lines below it list the functions this one called.
 This line lists:
     index	A unique number given to each element of the table.
		Index numbers are sorted numerically.
		The index number is printed next to every function name so
		it is easier to look up where the function in the table.

     % time	This is the percentage of the `total' time that was spent
		in this function and its children.  Note that due to
		different viewpoints, functions excluded by options, etc,
		these numbers will NOT add up to 100%.

     self	This is the total amount of time spent in this function.

     children	This is the total amount of time propagated into this
		function by its children.

     called	This is the number of times the function was called.
		If the function called itself recursively, the number
		only includes non-recursive calls, and is followed by
		a `+' and the number of recursive calls.

     name	The name of the current function.  The index number is
		printed after it.  If the function is a member of a
		cycle, the cycle number is printed between the
		function's name and the index number.


 For the function's parents, the fields have the following meanings:

     self	This is the amount of time that was propagated directly
		from the function into this parent.

     children	This is the amount of time that was propagated from
		the function's children into this parent.

     called	This is the number of times this parent called the
		function `/' the total number of times the function
		was called.  Recursive calls to the function are not
		included in the number after the `/'.

     name	This is the name of the parent.  The parent's index
		number is printed after it.  If the parent is a
		member of a cycle, the cycle number is printed between
		the name and the index number.

 If the parents of the function cannot be determined, the word
 `<spontaneous>' is printed in the `name' field, and all the other
 fields are blank.

 For the function's children, the fields have the following meanings:

     self	This is the amount of time that was propagated directly
		from the child into the function.

     children	This is the amount of time that was propagated from the
		child's children to the function.

     called	This is the number of times the function called
		this child `/' the total number of times the child
		was called.  Recursive calls by the child are not
		listed in the number after the `/'.

     name	This is the name of the child.  The child's index
		number is printed after it.  If the child is a
		member of a cycle, the cycle number is printed
		between the name and the index number.

 If there are any cycles (circles) in the call graph, there is an
 entry for the cycle-as-a-whole.  This entry shows who called the
 cycle (as parents) and the members of the cycle (as children.)
 The `+' recursive calls entry shows the number of function calls that
 were internal to the cycle, and the calls entry for each member shows,
 for that member, how many times it was called from other members of
 the cycle.


Index by function name

  [11] z1_Rnd::Gen1(void)     [38] Vector<double>::operator[](int) const [18] PeptideString::match(PeptideString *, int)
  [51] HandleINT             [126] Vector<double>::operator[](int) [24] PeptideString::mutateOnce(mutret_t &)
  [16] Location::WorldPop(void) [19] Location::biomassSummary(int) [46] Chromosome::nextGeneOffset(int)
 [138] z1_Rnd::~z1_Rnd(void)   [7] Organism::calculateEfficiencies(void) [48] PeptideString::nextGene(char **)
 [128] Material::~Material(void) [29] Location::calculateModifier(int) [32] parse(char *, ostream &)
 [134] Organism::~Organism(void) [6] Organism::calculateUptakeRates(void) [43] Material::partialDecompose(double)
  [40] Chromosome::Chromosome(char *) [47] EnVar::datalog(ostream &) [49] PeptideString::prependGene(PeptideString *)
  [12] Chromosome::Chromosome(Chromosome &, double) [35] Material::datalog(ostream &) [20] BaseList::prepend(void *)
  [15] Gene::Gene(PeptideString *, int, int, int, int) [28] Organism::datalog(ostream &) [41] PeptideString::rChar(void)
  [26] Material::Material(PeptideString const *) [25] datalog(int) [3] Reaction::react(double, Material &)
  [27] Material::Material(char const *) [8] Location::decompose(void) [22] Location::removeBiota(Organism *)
 [131] Material::Material(Material &) [39] Organism::die(void) [34] BaseList::remove(void *)
 [129] Material::Material(double) [31] Organism::dltraits(ostream &) [50] PeptideString::replaceGene(int, int, PeptideString *)
  [33] Organism::Organism(Chromosome &, Material &, int, int, char) [23] epilogue(char *) [36] Literator::reset(void)
 [127] Literator::Literator(void) [4] Reaction::equilibriumP(Material &) [42] Location::resourceSummary(int)
 [132] Material::operator+=(Material const &) [52] PeptideString::geneCount(void) const [45] PeptideString::skipGene(char *, int)
 [130] Vector<double>::operator=(Vector<double> const &) [13] BiotaIterator::getNext(void) [55] PeptideString::split(int)
 [139] operator<<(ostream &, PeptideString const &) [21] Literator::getOne(void) [44] PeptideString::subString(int, int) const
 [135] operator<<(ostream &, Date const &) [53] PeptideString::init(int) [9] Material::totalDecompose(void)
 [136] operator<<(ostream &, Material const &) [54] PeptideString::insert(PeptideString *, int) [30] Location::updateEnv(void)
 [133] Material::operator+(Material const &) const [14] BaseList::length(void) [5] Location::updateShare(void)
 [137] __static_initialization_and_destruction_0 (mylist.h) [2] Organism::live(void) [10] yylex
 [140] __static_initialization_and_destruction_0 (peptidestring.C) [17] Protopeptide::lookup(PeptideString *, short *, int *) [37] yyparse
 [141] __static_initialization_and_destruction_0 (random.C) [1] main