call graph profile: The sum of self and descendents is the major sort for this listing. function entries: index the index of the function in the call graph listing, as an aid to locating it (see below). %time the percentage of the total time of the program accounted for by this function and its descendents. self the number of seconds spent in this function itself. descendents the number of seconds spent in the descendents of this function on behalf of this function. called the number of times this function is called (other than recursive calls). self the number of times this function calls itself recursively. name the name of the function, with an indication of its membership in a cycle, if any. index the index of the function in the call graph listing, as an aid to locating it. parent listings: self* the number of seconds of this function's self time which is due to calls from this parent. descendents* the number of seconds of this function's descendent time which is due to calls from this parent. called** the number of times this function is called by this parent. This is the numerator of the fraction which divides up the function's time to its parents. total* the number of times this function was called by all of its parents. This is the denominator of the propagation fraction. parents the name of this parent, with an indication of the parent's membership in a cycle, if any. index the index of this parent in the call graph listing, as an aid in locating it. children listings: self* the number of seconds of this child's self time which is due to being called by this function. descendent* the number of seconds of this child's descendent's time which is due to being called by this function. called** the number of times this child is called by this function. This is the numerator of the propagation fraction for this child. total* the number of times this child is called by all functions. This is the denominator of the propagation fraction. children the name of this child, and an indication of its membership in a cycle, if any. index the index of this child in the call graph listing, as an aid to locating it. * these fields are omitted for parents (or children) in the same cycle as the function. If the function (or child) is a member of a cycle, the propagated times and propagation denominator represent the self time and descendent time of the cycle as a whole. ** static-only parents and children are indicated by a call count of 0. cycle listings: the cycle as a whole is listed with the same fields as a function entry. Below it are listed the members of the cycle, and their contributions to the time and call counts of the cycle. granularity: each sample hit covers 8 byte(s) for 0.00% of 329.16 seconds called/total parents index %time self descendents called+self name index called/total children 0.10 328.13 1/1 __start [2] [1] 99.7 0.10 328.13 1 main [1] 67.08 251.23 374347/374347 _ZN8Organism4liveEv [3] 0.61 5.96 999/999 _ZN8Location11updateShareEv [8] 0.69 2.26 998/998 _ZN8Location9decomposeEv [12] 0.13 0.00 410311/412401 _ZN13BiotaIterator7getNextEv [25] 0.00 0.08 1/2 _ZN8Location14biomassSummaryEi [21] 0.00 0.05 1000/1001 _ZN8Location8WorldPopEv [40] 0.03 0.02 36963/36963 _ZN9Literator6getOneEv [43] 0.00 0.00 999/999 _ZN9Literator5resetEv [71] 0.00 0.00 1/2 _ZN8Location15resourceSummaryEi [74] 0.00 0.00 1/42781902 _ZN6VectorIfEC2Eif [6] 0.00 0.00 1/7 _ZlsRSoRK8Material [119] 0.00 0.00 1/1 _ZN9LiteratorC1Ev [137] ----------------------------------------------- 67.08 251.23 374347/374347 main [1] [3] 96.7 67.08 251.23 374347 _ZN8Organism4liveEv [3] 135.11 97.94 7872789/7872789 _ZN8Reaction5reactEdR8Material [4] 5.60 0.83 970005/970447 _ZN8Material16exchangeMaterialES_ [9] 6.18 0.00 5296041/13300626 _ZN6VectorIfEC2ERKS0_ [7] 2.20 0.00 2563239/42781902 _ZN6VectorIfEC2Eif [6] 1.24 0.00 9357317/9357317 _ZN12Protopeptide6effectEiR5EnVarR8Material [14] 0.80 0.00 929161/929161 _ZN10Chromosome9findCodonEi [15] 0.58 0.00 1217226/1341501 _ZN6z1_Rnd4Gen1Ev [16] 0.01 0.19 765/765 _ZN8OrganismC1ERS_P10Chromosome [19] 0.01 0.17 765/1638 _ZN10ChromosomeC1ERS_d [18] 0.06 0.11 273333/273775 _ZN8Location11removeBiotaEP8Organism [20] 0.05 0.00 274098/283037 _ZN8BaseList7prependEPv [39] 0.04 0.00 765/36697 _ZN8Material14totalDecomposeEv [13] 0.03 0.00 69155/137936 _ZN8Position5moveSEii [46] 0.03 0.00 68781/137936 _ZN8Position5moveWEii [50] 0.02 0.00 69670/135397 _ZN8Position5moveEEii [52] 0.02 0.00 65727/135397 _ZN8Position5moveNEii [53] 0.01 0.00 20015/20888 _ZN10Chromosome14nextGeneOffsetEi [55] ----------------------------------------------- 135.11 97.94 7872789/7872789 _ZN8Organism4liveEv [3] [4] 70.8 135.11 97.94 7872789 _ZN8Reaction5reactEdR8Material [4] 55.31 0.00 21511360/21511360 _ZN8Reaction12equilibriumPER8Material [5] 33.44 0.00 38905156/42781902 _ZN6VectorIfEC2Eif [6] 9.18 0.00 7872789/13300626 _ZN6VectorIfEC2ERKS0_ [7] ----------------------------------------------- 55.31 0.00 21511360/21511360 _ZN8Reaction5reactEdR8Material [4] [5] 16.8 55.31 0.00 21511360 _ZN8Reaction12equilibriumPER8Material [5] ----------------------------------------------- 0.00 0.00 1/42781902 main [1] 0.00 0.00 1/42781902 _ZN8MaterialC2EPKc [77] 0.00 0.00 6/42781902 _Z5parsePcRSo [38] 0.00 0.00 71/42781902 _ZN8MaterialC2Ef [75] 0.00 0.00 122/42781902 _ZN8Location15resourceSummaryEi [74] 0.00 0.00 216/42781902 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 0.00 0.00 541/42781902 _ZN8Location14biomassSummaryEi [21] 0.00 0.00 981/42781902 _ZN8MaterialC1EPK13PeptideString [27] 0.00 0.00 1638/42781902 _ZN10ChromosomeC1ERS_d [18] 0.00 0.00 1638/42781902 _ZN8MaterialC1EPKc [24] 0.00 0.00 2330/42781902 _ZN8MaterialC2EPK13PeptideString [56] 0.00 0.00 3060/42781902 _ZN8OrganismC1ERS_P10Chromosome [19] 0.03 0.00 35928/42781902 _ZN8Location9decomposeEv [12] 0.05 0.00 63036/42781902 _ZN8MaterialC1Ef [28] 0.20 0.00 233491/42781902 _ZN8Material14totalDecomposeEv [13] 0.83 0.00 970447/42781902 _ZN8Material16exchangeMaterialES_ [9] 2.20 0.00 2563239/42781902 _ZN8Organism4liveEv [3] 33.44 0.00 38905156/42781902 _ZN8Reaction5reactEdR8Material [4] [6] 11.2 36.78 0.00 42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.00 0.00 1/13300626 _ZN8Material16partialDecomposeEd [76] 0.00 0.00 15/13300626 _ZN10ChromosomeC1ERS_d [18] 0.00 0.00 36/13300626 _Z5parsePcRSo [38] 0.00 0.00 120/13300626 _ZN8Location15resourceSummaryEi [74] 0.00 0.00 432/13300626 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 0.00 0.00 442/13300626 _ZN8Organism3dieEv [35] 0.00 0.00 1530/13300626 _ZN8OrganismC1ERS_P10Chromosome [19] 0.00 0.00 3348/13300626 _ZN4GeneC1ERS_i [57] 0.15 0.00 125872/13300626 _ZN8Location9decomposeEv [12] 6.18 0.00 5296041/13300626 _ZN8Organism4liveEv [3] 9.18 0.00 7872789/13300626 _ZN8Reaction5reactEdR8Material [4] [7] 4.7 15.52 0.00 13300626 _ZN6VectorIfEC2ERKS0_ [7] ----------------------------------------------- 0.61 5.96 999/999 main [1] [8] 2.0 0.61 5.96 999 _ZN8Location11updateShareEv [8] 1.50 4.34 284702/284810 _ZN8Organism20calculateUptakeRatesEv [10] 0.03 0.04 35964/35964 _ZN8Location9updateEnvEv [36] 0.05 0.00 35964/72000 _ZN8BaseList6lengthEv [29] 0.02 0.00 36963/1341501 _ZN6z1_Rnd4Gen1Ev [16] ----------------------------------------------- 0.00 0.00 442/970447 _ZN8Organism3dieEv [35] 5.60 0.83 970005/970447 _ZN8Organism4liveEv [3] [9] 2.0 5.61 0.83 970447 _ZN8Material16exchangeMaterialES_ [9] 0.83 0.00 970447/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.00 0.00 108/284810 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 1.50 4.34 284702/284810 _ZN8Location11updateShareEv [8] [10] 1.8 1.50 4.34 284810 _ZN8Organism20calculateUptakeRatesEv [10] 4.34 0.00 285575/285683 _ZN8Organism21calculateEfficienciesEv [11] ----------------------------------------------- 0.00 0.00 108/285683 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 4.34 0.00 285575/285683 _ZN8Organism20calculateUptakeRatesEv [10] [11] 1.3 4.34 0.00 285683 _ZN8Organism21calculateEfficienciesEv [11] ----------------------------------------------- 0.69 2.26 998/998 main [1] [12] 0.9 0.69 2.26 998 _ZN8Location9decomposeEv [12] 1.79 0.20 35928/36697 _ZN8Material14totalDecomposeEv [13] 0.15 0.00 125872/13300626 _ZN6VectorIfEC2ERKS0_ [7] 0.04 0.04 44972/63036 _ZN8MaterialC1Ef [28] 0.03 0.00 35928/42781902 _ZN6VectorIfEC2Eif [6] 0.02 0.00 36926/1341501 _ZN6z1_Rnd4Gen1Ev [16] 0.00 0.00 89944/109431 _ZN6VectorIfED2Ev [63] 0.00 0.00 8711/282486 _ZN8BaseList6removeEPv [42] 0.00 0.00 8711/8711 _ZN4ListIP7ProteinE4findES1_ [69] ----------------------------------------------- 0.00 0.00 1/36697 _ZN8Location14biomassSummaryEi [21] 0.00 0.00 1/36697 _Z5parsePcRSo [38] 0.00 0.00 2/36697 _ZN8Location15resourceSummaryEi [74] 0.04 0.00 765/36697 _ZN8Organism4liveEv [3] 1.79 0.20 35928/36697 _ZN8Location9decomposeEv [12] [13] 0.6 1.83 0.20 36697 _ZN8Material14totalDecomposeEv [13] 0.20 0.00 233491/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 1.24 0.00 9357317/9357317 _ZN8Organism4liveEv [3] [14] 0.4 1.24 0.00 9357317 _ZN12Protopeptide6effectEiR5EnVarR8Material [14] ----------------------------------------------- 0.80 0.00 929161/929161 _ZN8Organism4liveEv [3] [15] 0.2 0.80 0.00 929161 _ZN10Chromosome9findCodonEi [15] ----------------------------------------------- 0.00 0.00 2763/1341501 _ZN3Urn4drawEv [58] 0.00 0.00 4943/1341501 _ZN10ChromosomeC1ERS_d [18] 0.00 0.00 5717/1341501 _ZN13PeptideString10mutateOnceER8mutret_t [31] 0.02 0.00 36926/1341501 _ZN8Location9decomposeEv [12] 0.02 0.00 36963/1341501 _ZN8Location11updateShareEv [8] 0.02 0.00 36963/1341501 _ZN9Literator6getOneEv [43] 0.58 0.00 1217226/1341501 _ZN8Organism4liveEv [3] [16] 0.2 0.64 0.00 1341501 _ZN6z1_Rnd4Gen1Ev [16] ----------------------------------------------- 0.00 0.02 108/1638 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 0.01 0.17 765/1638 _ZN8Organism4liveEv [3] 0.01 0.17 765/1638 _ZN8OrganismC1ERS_P10Chromosome [19] [18] 0.1 0.03 0.37 1638 _ZN10ChromosomeC1ERS_d [18] 0.01 0.15 2299/2330 _ZN4GeneC1EP13PeptideStringiiii [22] 0.13 0.00 1638/1638 _ZN8MaterialC1EPKc [24] 0.07 0.01 2763/2763 _ZN13PeptideString10mutateOnceER8mutret_t [31] 0.00 0.00 4943/1341501 _ZN6z1_Rnd4Gen1Ev [16] 0.00 0.00 1638/42781902 _ZN6VectorIfEC2Eif [6] 0.00 0.00 15/13300626 _ZN6VectorIfEC2ERKS0_ [7] 0.00 0.00 15/2345 _ZNK13PeptideString9subStringEii [66] 0.00 0.00 15/15 _ZN13PeptideString11prependGeneEPS_ [116] 0.00 0.00 14/14 _ZN13PeptideString11replaceGeneEiiPS_ [117] ----------------------------------------------- 0.01 0.19 765/765 _ZN8Organism4liveEv [3] [19] 0.1 0.01 0.19 765 _ZN8OrganismC1ERS_P10Chromosome [19] 0.01 0.17 765/1638 _ZN10ChromosomeC1ERS_d [18] 0.00 0.00 3060/42781902 _ZN6VectorIfEC2Eif [6] 0.00 0.00 1530/13300626 _ZN6VectorIfEC2ERKS0_ [7] 0.00 0.00 765/20888 _ZN10Chromosome14nextGeneOffsetEi [55] ----------------------------------------------- 0.00 0.00 442/273775 _ZN8Organism3dieEv [35] 0.06 0.11 273333/273775 _ZN8Organism4liveEv [3] [20] 0.1 0.06 0.11 273775 _ZN8Location11removeBiotaEP8Organism [20] 0.07 0.00 547550/547550 _ZN4ListIP8OrganismE4findES1_ [33] 0.04 0.00 273775/282486 _ZN8BaseList6removeEPv [42] ----------------------------------------------- 0.00 0.08 1/2 _Z8epiloguePc [32] 0.00 0.08 1/2 main [1] [21] 0.0 0.00 0.15 2 _ZN8Location14biomassSummaryEi [21] 0.03 0.03 16986/16986 _ZNK8MaterialmlEf [37] 0.06 0.00 539/981 _ZN8MaterialC1EPK13PeptideString [27] 0.03 0.00 18064/18064 _ZN8MaterialpLERKS_ [49] 0.00 0.00 1078/1078 _ZNK8MaterialplERKS_ [60] 0.00 0.00 541/42781902 _ZN6VectorIfEC2Eif [6] 0.00 0.00 18603/109431 _ZN6VectorIfED2Ev [63] 0.00 0.00 1/36697 _ZN8Material14totalDecomposeEv [13] ----------------------------------------------- 0.00 0.00 31/2330 _ZN10ChromosomeC1EPc [62] 0.01 0.15 2299/2330 _ZN10ChromosomeC1ERS_d [18] [22] 0.0 0.01 0.15 2330 _ZN4GeneC1EP13PeptideStringiiii [22] 0.01 0.13 2330/2330 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [23] 0.01 0.00 2330/2330 _ZN8MaterialC2EPK13PeptideString [56] 0.00 0.00 2330/2345 _ZNK13PeptideString9subStringEii [66] ----------------------------------------------- 0.01 0.13 2330/2330 _ZN4GeneC1EP13PeptideStringiiii [22] [23] 0.0 0.01 0.13 2330 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [23] 0.12 0.00 153780/153780 _ZN13PeptideString5matchEPS_i [26] 0.00 0.00 2330/2330 _ZN13PeptideString8skipGeneEPci [70] ----------------------------------------------- 0.13 0.00 1638/1638 _ZN10ChromosomeC1ERS_d [18] [24] 0.0 0.13 0.00 1638 _ZN8MaterialC1EPKc [24] 0.00 0.00 1638/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.00 0.00 2090/412401 _Z7datalogi [48] 0.13 0.00 410311/412401 main [1] [25] 0.0 0.13 0.00 412401 _ZN13BiotaIterator7getNextEv [25] ----------------------------------------------- 0.12 0.00 153780/153780 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [23] [26] 0.0 0.12 0.00 153780 _ZN13PeptideString5matchEPS_i [26] ----------------------------------------------- 0.05 0.00 442/981 _ZN8Organism3dieEv [35] 0.06 0.00 539/981 _ZN8Location14biomassSummaryEi [21] [27] 0.0 0.10 0.00 981 _ZN8MaterialC1EPK13PeptideString [27] 0.00 0.00 981/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.00 0.00 1078/63036 _ZNK8MaterialplERKS_ [60] 0.01 0.01 16986/63036 _ZNK8MaterialmlEf [37] 0.04 0.04 44972/63036 _ZN8Location9decomposeEv [12] [28] 0.0 0.05 0.05 63036 _ZN8MaterialC1Ef [28] 0.05 0.00 63036/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.05 0.00 35964/72000 _ZN8Location11updateShareEv [8] 0.05 0.00 36036/72000 _ZN8Location8WorldPopEv [40] [29] 0.0 0.09 0.00 72000 _ZN8BaseList6lengthEv [29] ----------------------------------------------- 0.07 0.01 2763/2763 _ZN10ChromosomeC1ERS_d [18] [31] 0.0 0.07 0.01 2763 _ZN13PeptideString10mutateOnceER8mutret_t [31] 0.00 0.00 2763/2763 _ZN3Urn4drawEv [58] 0.00 0.00 5717/1341501 _ZN6z1_Rnd4Gen1Ev [16] 0.00 0.00 24/24 _ZN13PeptideString10insertCharEic [67] ----------------------------------------------- [32] 0.0 0.00 0.08 _Z8epiloguePc [32] 0.00 0.08 1/2 _ZN8Location14biomassSummaryEi [21] 0.00 0.00 1/2 _ZN8Location15resourceSummaryEi [74] 0.00 0.00 1/1001 _ZN8Location8WorldPopEv [40] 0.00 0.00 2/7 _ZlsRSoRK8Material [119] 0.00 0.00 1/8 _ZlsRSoRK4Date [118] ----------------------------------------------- 0.07 0.00 547550/547550 _ZN8Location11removeBiotaEP8Organism [20] [33] 0.0 0.07 0.00 547550 _ZN4ListIP8OrganismE4findES1_ [33] ----------------------------------------------- [35] 0.0 0.01 0.06 _ZN8Organism3dieEv [35] 0.05 0.00 442/981 _ZN8MaterialC1EPK13PeptideString [27] 0.00 0.00 5255/5255 _ZN7ProteinD1Ev [61] 0.00 0.00 442/970447 _ZN8Material16exchangeMaterialES_ [9] 0.00 0.00 8831/283037 _ZN8BaseList7prependEPv [39] 0.00 0.00 442/13300626 _ZN6VectorIfEC2ERKS0_ [7] 0.00 0.00 442/273775 _ZN8Location11removeBiotaEP8Organism [20] ----------------------------------------------- 0.03 0.04 35964/35964 _ZN8Location11updateShareEv [8] [36] 0.0 0.03 0.04 35964 _ZN8Location9updateEnvEv [36] 0.04 0.00 71928/71928 _ZN8Location17calculateModifierEi [47] ----------------------------------------------- 0.03 0.03 16986/16986 _ZN8Location14biomassSummaryEi [21] [37] 0.0 0.03 0.03 16986 _ZNK8MaterialmlEf [37] 0.01 0.01 16986/63036 _ZN8MaterialC1Ef [28] ----------------------------------------------- [38] 0.0 0.02 0.04 _Z5parsePcRSo [38] 0.00 0.04 108/108 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 0.00 0.00 1/1 _ZN10ChromosomeC1EPc [62] 0.00 0.00 71/71 _ZN8MaterialC2Ef [75] 0.00 0.00 1/36697 _ZN8Material14totalDecomposeEv [13] 0.00 0.00 36/13300626 _ZN6VectorIfEC2ERKS0_ [7] 0.00 0.00 108/283037 _ZN8BaseList7prependEPv [39] 0.00 0.00 6/42781902 _ZN6VectorIfEC2Eif [6] 0.00 0.00 1/1 _ZN8Material16partialDecomposeEd [76] 0.00 0.00 36/36 _ZN5EnVarC1ERKS_ [113] 0.00 0.00 36/36 _ZN6VectorIfEaSERKS0_ [114] 0.00 0.00 36/36 _ZN5EnVar11setDefaultsEPd [112] 0.00 0.00 4/7 _ZlsRSoRK8Material [119] 0.00 0.00 1/1 _ZN13PeptideString4initEi [134] 0.00 0.00 1/1 _ZN13ReactionTable10initializeEPfPd [135] ----------------------------------------------- 0.00 0.00 108/283037 _Z5parsePcRSo [38] 0.00 0.00 8831/283037 _ZN8Organism3dieEv [35] 0.05 0.00 274098/283037 _ZN8Organism4liveEv [3] [39] 0.0 0.05 0.00 283037 _ZN8BaseList7prependEPv [39] ----------------------------------------------- 0.00 0.00 1/1001 _Z8epiloguePc [32] 0.00 0.05 1000/1001 main [1] [40] 0.0 0.00 0.05 1001 _ZN8Location8WorldPopEv [40] 0.05 0.00 36036/72000 _ZN8BaseList6lengthEv [29] ----------------------------------------------- 0.00 0.00 8711/282486 _ZN8Location9decomposeEv [12] 0.04 0.00 273775/282486 _ZN8Location11removeBiotaEP8Organism [20] [42] 0.0 0.05 0.00 282486 _ZN8BaseList6removeEPv [42] ----------------------------------------------- 0.03 0.02 36963/36963 main [1] [43] 0.0 0.03 0.02 36963 _ZN9Literator6getOneEv [43] 0.02 0.00 36963/1341501 _ZN6z1_Rnd4Gen1Ev [16] ----------------------------------------------- 0.00 0.04 108/108 _Z5parsePcRSo [38] [45] 0.0 0.00 0.04 108 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 0.00 0.02 108/1638 _ZN10ChromosomeC1ERS_d [18] 0.00 0.00 3348/3348 _ZN4GeneC1ERS_i [57] 0.00 0.00 108/284810 _ZN8Organism20calculateUptakeRatesEv [10] 0.00 0.00 108/285683 _ZN8Organism21calculateEfficienciesEv [11] 0.00 0.00 432/13300626 _ZN6VectorIfEC2ERKS0_ [7] 0.00 0.00 216/42781902 _ZN6VectorIfEC2Eif [6] 0.00 0.00 108/20888 _ZN10Chromosome14nextGeneOffsetEi [55] ----------------------------------------------- 11473 _ZN8Position5moveWEii [50] 0.03 0.00 69155/137936 _ZN8Organism4liveEv [3] [46] 0.0 0.04 0.00 80628 _ZN8Position5moveSEii [46] 11660 _ZN8Position5moveWEii [50] ----------------------------------------------- 0.04 0.00 71928/71928 _ZN8Location9updateEnvEv [36] [47] 0.0 0.04 0.00 71928 _ZN8Location17calculateModifierEi [47] ----------------------------------------------- [48] 0.0 0.01 0.03 _Z7datalogi [48] 0.01 0.01 1838/1838 _ZN8Organism7datalogERSo [51] 0.00 0.00 252/2090 _ZN8Material7datalogERSo [54] 0.00 0.00 252/252 _ZN5EnVar7datalogERSo [72] 0.00 0.00 2090/412401 _ZN13BiotaIterator7getNextEv [25] 0.00 0.00 7/8 _ZlsRSoRK4Date [118] ----------------------------------------------- 0.03 0.00 18064/18064 _ZN8Location14biomassSummaryEi [21] [49] 0.0 0.03 0.00 18064 _ZN8MaterialpLERKS_ [49] ----------------------------------------------- 11660 _ZN8Position5moveSEii [46] 0.03 0.00 68781/137936 _ZN8Organism4liveEv [3] [50] 0.0 0.03 0.00 80441 _ZN8Position5moveWEii [50] 11473 _ZN8Position5moveSEii [46] ----------------------------------------------- 0.01 0.01 1838/1838 _Z7datalogi [48] [51] 0.0 0.01 0.01 1838 _ZN8Organism7datalogERSo [51] 0.01 0.00 1838/2090 _ZN8Material7datalogERSo [54] ----------------------------------------------- 11056 _ZN8Position5moveNEii [53] 0.02 0.00 69670/135397 _ZN8Organism4liveEv [3] [52] 0.0 0.02 0.00 80726 _ZN8Position5moveEEii [52] 11649 _ZN8Position5moveNEii [53] ----------------------------------------------- 11649 _ZN8Position5moveEEii [52] 0.02 0.00 65727/135397 _ZN8Organism4liveEv [3] [53] 0.0 0.02 0.00 77376 _ZN8Position5moveNEii [53] 11056 _ZN8Position5moveEEii [52] ----------------------------------------------- 0.00 0.00 252/2090 _Z7datalogi [48] 0.01 0.00 1838/2090 _ZN8Organism7datalogERSo [51] [54] 0.0 0.02 0.00 2090 _ZN8Material7datalogERSo [54] ----------------------------------------------- 0.00 0.00 108/20888 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 0.00 0.00 765/20888 _ZN8OrganismC1ERS_P10Chromosome [19] 0.01 0.00 20015/20888 _ZN8Organism4liveEv [3] [55] 0.0 0.01 0.00 20888 _ZN10Chromosome14nextGeneOffsetEi [55] ----------------------------------------------- 0.01 0.00 2330/2330 _ZN4GeneC1EP13PeptideStringiiii [22] [56] 0.0 0.01 0.00 2330 _ZN8MaterialC2EPK13PeptideString [56] 0.00 0.00 2330/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.00 0.00 3348/3348 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] [57] 0.0 0.00 0.00 3348 _ZN4GeneC1ERS_i [57] 0.00 0.00 3348/13300626 _ZN6VectorIfEC2ERKS0_ [7] ----------------------------------------------- 0.00 0.00 2763/2763 _ZN13PeptideString10mutateOnceER8mutret_t [31] [58] 0.0 0.00 0.00 2763 _ZN3Urn4drawEv [58] 0.00 0.00 2763/1341501 _ZN6z1_Rnd4Gen1Ev [16] ----------------------------------------------- 0.00 0.00 1078/1078 _ZN8Location14biomassSummaryEi [21] [60] 0.0 0.00 0.00 1078 _ZNK8MaterialplERKS_ [60] 0.00 0.00 1078/63036 _ZN8MaterialC1Ef [28] ----------------------------------------------- 0.00 0.00 5255/5255 _ZN8Organism3dieEv [35] [61] 0.0 0.00 0.00 5255 _ZN7ProteinD1Ev [61] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [38] [62] 0.0 0.00 0.00 1 _ZN10ChromosomeC1EPc [62] 0.00 0.00 31/2330 _ZN4GeneC1EP13PeptideStringiiii [22] 0.00 0.00 1/1 _ZNK13PeptideString9geneCountEv [73] 0.00 0.00 1/1 _ZN8MaterialC2EPKc [77] 0.00 0.00 31/31 _ZN13PeptideString8nextGeneEPPc [115] ----------------------------------------------- 0.00 0.00 884/109431 _ZN8OrganismD1Ev [64] 0.00 0.00 18603/109431 _ZN8Location14biomassSummaryEi [21] 0.00 0.00 89944/109431 _ZN8Location9decomposeEv [12] [63] 0.0 0.00 0.00 109431 _ZN6VectorIfED2Ev [63] ----------------------------------------------- [64] 0.0 0.00 0.00 _ZN8OrganismD1Ev [64] 0.00 0.00 884/109431 _ZN6VectorIfED2Ev [63] 0.00 0.00 884/884 _ZN13PeptideStringD2Ev [111] ----------------------------------------------- 0.00 0.00 15/2345 _ZN10ChromosomeC1ERS_d [18] 0.00 0.00 2330/2345 _ZN4GeneC1EP13PeptideStringiiii [22] [66] 0.0 0.00 0.00 2345 _ZNK13PeptideString9subStringEii [66] ----------------------------------------------- 0.00 0.00 24/24 _ZN13PeptideString10mutateOnceER8mutret_t [31] [67] 0.0 0.00 0.00 24 _ZN13PeptideString10insertCharEic [67] ----------------------------------------------- 0.00 0.00 8711/8711 _ZN8Location9decomposeEv [12] [69] 0.0 0.00 0.00 8711 _ZN4ListIP7ProteinE4findES1_ [69] ----------------------------------------------- 0.00 0.00 2330/2330 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [23] [70] 0.0 0.00 0.00 2330 _ZN13PeptideString8skipGeneEPci [70] ----------------------------------------------- 0.00 0.00 999/999 main [1] [71] 0.0 0.00 0.00 999 _ZN9Literator5resetEv [71] ----------------------------------------------- 0.00 0.00 252/252 _Z7datalogi [48] [72] 0.0 0.00 0.00 252 _ZN5EnVar7datalogERSo [72] ----------------------------------------------- 0.00 0.00 1/1 _ZN10ChromosomeC1EPc [62] [73] 0.0 0.00 0.00 1 _ZNK13PeptideString9geneCountEv [73] ----------------------------------------------- 0.00 0.00 1/2 _Z8epiloguePc [32] 0.00 0.00 1/2 main [1] [74] 0.0 0.00 0.00 2 _ZN8Location15resourceSummaryEi [74] 0.00 0.00 120/13300626 _ZN6VectorIfEC2ERKS0_ [7] 0.00 0.00 2/36697 _ZN8Material14totalDecomposeEv [13] 0.00 0.00 122/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.00 0.00 71/71 _Z5parsePcRSo [38] [75] 0.0 0.00 0.00 71 _ZN8MaterialC2Ef [75] 0.00 0.00 71/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [38] [76] 0.0 0.00 0.00 1 _ZN8Material16partialDecomposeEd [76] 0.00 0.00 1/13300626 _ZN6VectorIfEC2ERKS0_ [7] ----------------------------------------------- 0.00 0.00 1/1 _ZN10ChromosomeC1EPc [62] [77] 0.0 0.00 0.00 1 _ZN8MaterialC2EPKc [77] 0.00 0.00 1/42781902 _ZN6VectorIfEC2Eif [6] ----------------------------------------------- 0.00 0.00 884/884 _ZN8OrganismD1Ev [64] [111] 0.0 0.00 0.00 884 _ZN13PeptideStringD2Ev [111] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [38] [112] 0.0 0.00 0.00 36 _ZN5EnVar11setDefaultsEPd [112] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [38] [113] 0.0 0.00 0.00 36 _ZN5EnVarC1ERKS_ [113] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [38] [114] 0.0 0.00 0.00 36 _ZN6VectorIfEaSERKS0_ [114] ----------------------------------------------- 0.00 0.00 31/31 _ZN10ChromosomeC1EPc [62] [115] 0.0 0.00 0.00 31 _ZN13PeptideString8nextGeneEPPc [115] ----------------------------------------------- 0.00 0.00 15/15 _ZN10ChromosomeC1ERS_d [18] [116] 0.0 0.00 0.00 15 _ZN13PeptideString11prependGeneEPS_ [116] ----------------------------------------------- 0.00 0.00 14/14 _ZN10ChromosomeC1ERS_d [18] [117] 0.0 0.00 0.00 14 _ZN13PeptideString11replaceGeneEiiPS_ [117] ----------------------------------------------- 0.00 0.00 1/8 _Z8epiloguePc [32] 0.00 0.00 7/8 _Z7datalogi [48] [118] 0.0 0.00 0.00 8 _ZlsRSoRK4Date [118] ----------------------------------------------- 0.00 0.00 1/7 main [1] 0.00 0.00 2/7 _Z8epiloguePc [32] 0.00 0.00 4/7 _Z5parsePcRSo [38] [119] 0.0 0.00 0.00 7 _ZlsRSoRK8Material [119] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [120] 0.0 0.00 0.00 1 _GLOBAL__I_TargetOrganism [120] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [121] 0.0 0.00 0.00 1 _GLOBAL__I__ZN10Chromosome6RegLenE [121] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [122] 0.0 0.00 0.00 1 _GLOBAL__I__ZN12Protopeptide13NoFunctionMsgE [122] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [123] 0.0 0.00 0.00 1 _GLOBAL__I__ZN13PeptideString3NILE [123] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [124] 0.0 0.00 0.00 1 _GLOBAL__I__ZN4Date11currentTimeE [124] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [125] 0.0 0.00 0.00 1 _GLOBAL__I__ZN6Serial12nextSerialNoE [125] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [126] 0.0 0.00 0.00 1 _GLOBAL__I__ZN6z1_Rnd3RNGE [126] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [127] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8BaseList7prependEPv [127] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [128] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Location4NLocE [128] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [129] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Material7findMinEii [129] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [130] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Position1XE [130] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [131] 0.0 0.00 0.00 1 _GLOBAL__I__ZlsRSoR4Gene [131] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [132] 0.0 0.00 0.00 1 _GLOBAL__I__ZlsRSoR7Protein [132] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [153] [133] 0.0 0.00 0.00 1 _GLOBAL__I_sfn [133] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [38] [134] 0.0 0.00 0.00 1 _ZN13PeptideString4initEi [134] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [38] [135] 0.0 0.00 0.00 1 _ZN13ReactionTable10initializeEPfPd [135] ----------------------------------------------- 0.00 0.00 1/1 _Z41__static_initialization_and_destruction_0ii [161] [136] 0.0 0.00 0.00 1 _ZN13ReactionTableC1Ei [136] ----------------------------------------------- 0.00 0.00 1/1 main [1] [137] 0.0 0.00 0.00 1 _ZN9LiteratorC1Ev [137] ----------------------------------------------- flat profile: % the percentage of the total running time of the time program used by this function. cumulative a running sum of the number of seconds accounted seconds for by this function and those listed above it. self the number of seconds accounted for by this seconds function alone. This is the major sort for this listing. calls the number of times this function was invoked, if this function is profiled, else blank. self the average number of milliseconds spent in this ms/call function per call, if this function is profiled, else blank. total the average number of milliseconds spent in this ms/call function and its descendents per call, if this function is profiled, else blank. name the name of the function. This is the minor sort for this listing. The index shows the location of the function in the gprof listing. If the index is in parenthesis it shows where it would appear in the gprof listing if it were to be printed. granularity: each sample hit covers 8 byte(s) for 0.00% of 329.16 seconds % cumulative self self total time seconds seconds calls ms/call ms/call name 41.0 135.11 135.11 7872789 0.02 0.03 _ZN8Reaction5reactEdR8Material [4] 20.4 202.19 67.08 374347 0.18 0.85 _ZN8Organism4liveEv [3] 16.8 257.50 55.31 21511360 0.00 0.00 _ZN8Reaction12equilibriumPER8Material [5] 11.2 294.27 36.78 42781902 0.00 0.00 _ZN6VectorIfEC2Eif [6] 4.7 309.79 15.52 13300626 0.00 0.00 _ZN6VectorIfEC2ERKS0_ [7] 1.7 315.40 5.61 970447 0.01 0.01 _ZN8Material16exchangeMaterialES_ [9] 1.3 319.73 4.34 285683 0.02 0.02 _ZN8Organism21calculateEfficienciesEv [11] 0.6 321.56 1.83 36697 0.05 0.06 _ZN8Material14totalDecomposeEv [13] 0.5 323.06 1.50 284810 0.01 0.02 _ZN8Organism20calculateUptakeRatesEv [10] 0.4 324.30 1.24 9357317 0.00 0.00 _ZN12Protopeptide6effectEiR5EnVarR8Material [14] 0.2 325.10 0.80 929161 0.00 0.00 _ZN10Chromosome9findCodonEi [15] 0.2 325.78 0.69 998 0.69 2.95 _ZN8Location9decomposeEv [12] 0.2 326.42 0.64 1341501 0.00 0.00 _ZN6z1_Rnd4Gen1Ev [16] 0.2 327.04 0.61 999 0.61 6.58 _ZN8Location11updateShareEv [8] 0.2 327.58 0.54 yylex [17] 0.0 327.70 0.13 412401 0.00 0.00 _ZN13BiotaIterator7getNextEv [25] 0.0 327.83 0.13 1638 0.08 0.08 _ZN8MaterialC1EPKc [24] 0.0 327.96 0.12 153780 0.00 0.00 _ZN13PeptideString5matchEPS_i [26] 0.0 328.06 0.10 981 0.11 0.11 _ZN8MaterialC1EPK13PeptideString [27] 0.0 328.16 0.10 1 99.17 328232.48 main [1] 0.0 328.25 0.09 72000 0.00 0.00 _ZN8BaseList6lengthEv [29] 0.0 328.35 0.09 yyparse [30] 0.0 328.42 0.07 2763 0.03 0.03 _ZN13PeptideString10mutateOnceER8mutret_t [31] 0.0 328.49 0.07 547550 0.00 0.00 _ZN4ListIP8OrganismE4findES1_ [33] 0.0 328.54 0.06 273775 0.00 0.00 _ZN8Location11removeBiotaEP8Organism [20] 0.0 328.59 0.05 283037 0.00 0.00 _ZN8BaseList7prependEPv [39] 0.0 328.64 0.05 63036 0.00 0.00 _ZN8MaterialC1Ef [28] 0.0 328.69 0.05 _ZN8Organism8dltraitsERSo [41] 0.0 328.74 0.05 282486 0.00 0.00 _ZN8BaseList6removeEPv [42] 0.0 328.77 0.04 80628 0.00 0.00 _ZN8Position5moveSEii [46] 0.0 328.81 0.04 71928 0.00 0.00 _ZN8Location17calculateModifierEi [47] 0.0 328.84 0.03 16986 0.00 0.00 _ZNK8MaterialmlEf [37] 0.0 328.87 0.03 18064 0.00 0.00 _ZN8MaterialpLERKS_ [49] 0.0 328.90 0.03 80441 0.00 0.00 _ZN8Position5moveWEii [50] 0.0 328.93 0.03 35964 0.00 0.00 _ZN8Location9updateEnvEv [36] 0.0 328.95 0.03 36963 0.00 0.00 _ZN9Literator6getOneEv [43] 0.0 328.98 0.03 1638 0.02 0.24 _ZN10ChromosomeC1ERS_d [18] 0.0 329.00 0.02 80726 0.00 0.00 _ZN8Position5moveEEii [52] 0.0 329.02 0.02 _Z5parsePcRSo [38] 0.0 329.04 0.02 77376 0.00 0.00 _ZN8Position5moveNEii [53] 0.0 329.05 0.02 2090 0.01 0.01 _ZN8Material7datalogERSo [54] 0.0 329.06 0.01 2330 0.01 0.06 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [23] 0.0 329.07 0.01 1838 0.01 0.01 _ZN8Organism7datalogERSo [51] 0.0 329.08 0.01 20888 0.00 0.00 _ZN10Chromosome14nextGeneOffsetEi [55] 0.0 329.09 0.01 _ZN8Organism3dieEv [35] 0.0 329.10 0.01 2330 0.00 0.07 _ZN4GeneC1EP13PeptideStringiiii [22] 0.0 329.11 0.01 765 0.01 0.26 _ZN8OrganismC1ERS_P10Chromosome [19] 0.0 329.12 0.01 2330 0.00 0.00 _ZN8MaterialC2EPK13PeptideString [56] 0.0 329.12 0.01 _Z7datalogi [48] 0.0 329.13 0.01 yy_get_previous_state [59] 0.0 329.13 0.00 2763 0.00 0.00 _ZN3Urn4drawEv [58] 0.0 329.13 0.00 2 2.08 79.36 _ZN8Location14biomassSummaryEi [21] 0.0 329.14 0.00 5255 0.00 0.00 _ZN7ProteinD1Ev [61] 0.0 329.14 0.00 109431 0.00 0.00 _ZN6VectorIfED2Ev [63] 0.0 329.14 0.00 1078 0.00 0.00 _ZNK8MaterialplERKS_ [60] 0.0 329.14 0.00 3348 0.00 0.00 _ZN4GeneC1ERS_i [57] 0.0 329.15 0.00 2345 0.00 0.00 _ZNK13PeptideString9subStringEii [66] 0.0 329.15 0.00 1001 0.00 0.05 _ZN8Location8WorldPopEv [40] 0.0 329.15 0.00 24 0.07 0.07 _ZN13PeptideString10insertCharEic [67] 0.0 329.15 0.00 _ZN8OrganismD1Ev [64] 0.0 329.15 0.00 yy_get_next_buffer [65] 0.0 329.15 0.00 8711 0.00 0.00 _ZN4ListIP7ProteinE4findES1_ [69] 0.0 329.15 0.00 2330 0.00 0.00 _ZN13PeptideString8skipGeneEPci [70] 0.0 329.15 0.00 999 0.00 0.00 _ZN9Literator5resetEv [71] 0.0 329.16 0.00 252 0.00 0.00 _ZN5EnVar7datalogERSo [72] 0.0 329.16 0.00 108 0.01 0.34 _ZN8OrganismC1ER10ChromosomeR8Materialiic [45] 0.0 329.16 0.00 1 0.83 0.83 _ZNK13PeptideString9geneCountEv [73] 0.0 329.16 0.00 yy_flush_buffer [68] 0.0 329.16 0.00 884 0.00 0.00 _ZN13PeptideStringD2Ev [111] 0.0 329.16 0.00 71 0.00 0.00 _ZN8MaterialC2Ef [75] 0.0 329.16 0.00 36 0.00 0.00 _ZN5EnVar11setDefaultsEPd [112] 0.0 329.16 0.00 36 0.00 0.00 _ZN5EnVarC1ERKS_ [113] 0.0 329.16 0.00 36 0.00 0.00 _ZN6VectorIfEaSERKS0_ [114] 0.0 329.16 0.00 31 0.00 0.00 _ZN13PeptideString8nextGeneEPPc [115] 0.0 329.16 0.00 15 0.00 0.00 _ZN13PeptideString11prependGeneEPS_ [116] 0.0 329.16 0.00 14 0.00 0.00 _ZN13PeptideString11replaceGeneEiiPS_ [117] 0.0 329.16 0.00 8 0.00 0.00 _ZlsRSoRK4Date [118] 0.0 329.16 0.00 7 0.00 0.00 _ZlsRSoRK8Material [119] 0.0 329.16 0.00 2 0.00 0.18 _ZN8Location15resourceSummaryEi [74] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I_TargetOrganism [120] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN10Chromosome6RegLenE [121] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN12Protopeptide13NoFunctionMsgE [122] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN13PeptideString3NILE [123] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN4Date11currentTimeE [124] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN6Serial12nextSerialNoE [125] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN6z1_Rnd3RNGE [126] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN8BaseList7prependEPv [127] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Location4NLocE [128] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Material7findMinEii [129] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Position1XE [130] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZlsRSoR4Gene [131] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I__ZlsRSoR7Protein [132] 0.0 329.16 0.00 1 0.00 0.00 _GLOBAL__I_sfn [133] 0.0 329.16 0.00 1 0.00 2.91 _ZN10ChromosomeC1EPc [62] 0.0 329.16 0.00 1 0.00 0.00 _ZN13PeptideString4initEi [134] 0.0 329.16 0.00 1 0.00 0.00 _ZN13ReactionTable10initializeEPfPd [135] 0.0 329.16 0.00 1 0.00 0.00 _ZN13ReactionTableC1Ei [136] 0.0 329.16 0.00 1 0.00 0.00 _ZN8Material16partialDecomposeEd [76] 0.0 329.16 0.00 1 0.00 0.00 _ZN8MaterialC2EPKc [77] 0.0 329.16 0.00 1 0.00 0.00 _ZN9LiteratorC1Ev [137] Index by function name [120] _GLOBAL__I_TargetOr [58] _ZN3Urn4drawEv [75] _ZN8MaterialC2Ef [121] _GLOBAL__I__ZN10Chr [22] _ZN4GeneC1EP13Pepti [49] _ZN8MaterialpLERKS_ [122] _GLOBAL__I__ZN12Pro [57] _ZN4GeneC1ERS_i [10] _ZN8Organism20calcu [123] _GLOBAL__I__ZN13Pep [69] _ZN4ListIP7ProteinE [11] _ZN8Organism21calcu [124] _GLOBAL__I__ZN4Date [33] _ZN4ListIP8Organism [35] _ZN8Organism3dieEv [125] _GLOBAL__I__ZN6Seri [112] _ZN5EnVar11setDefau [3] _ZN8Organism4liveEv [126] _GLOBAL__I__ZN6z1_R [72] _ZN5EnVar7datalogER [51] _ZN8Organism7datalo [127] _GLOBAL__I__ZN8Base [113] _ZN5EnVarC1ERKS_ [41] _ZN8Organism8dltrai [128] _GLOBAL__I__ZN8Loca [7] _ZN6VectorIfEC2ERKS [45] _ZN8OrganismC1ER10C [129] _GLOBAL__I__ZN8Mate [6] _ZN6VectorIfEC2Eif [19] _ZN8OrganismC1ERS_P [130] _GLOBAL__I__ZN8Posi [63] _ZN6VectorIfED2Ev [64] _ZN8OrganismD1Ev [131] _GLOBAL__I__ZlsRSoR [114] _ZN6VectorIfEaSERKS [52] _ZN8Position5moveEE [132] _GLOBAL__I__ZlsRSoR [16] _ZN6z1_Rnd4Gen1Ev [53] _ZN8Position5moveNE [133] _GLOBAL__I_sfn [61] _ZN7ProteinD1Ev [46] _ZN8Position5moveSE [38] _Z5parsePcRSo [29] _ZN8BaseList6length [50] _ZN8Position5moveWE [48] _Z7datalogi [42] _ZN8BaseList6remove [5] _ZN8Reaction12equil [55] _ZN10Chromosome14ne [39] _ZN8BaseList7prepen [4] _ZN8Reaction5reactE [15] _ZN10Chromosome9fin [20] _ZN8Location11remov [71] _ZN9Literator5reset [62] _ZN10ChromosomeC1EP [8] _ZN8Location11updat [43] _ZN9Literator6getOn [18] _ZN10ChromosomeC1ER [21] _ZN8Location14bioma [137] _ZN9LiteratorC1Ev [14] _ZN12Protopeptide6e [74] _ZN8Location15resou [73] _ZNK13PeptideString [23] _ZN12Protopeptide6l [47] _ZN8Location17calcu [66] _ZNK13PeptideString [25] _ZN13BiotaIterator7 [40] _ZN8Location8WorldP [37] _ZNK8MaterialmlEf [67] _ZN13PeptideString1 [12] _ZN8Location9decomp [60] _ZNK8MaterialplERKS [31] _ZN13PeptideString1 [36] _ZN8Location9update [118] _ZlsRSoRK4Date [116] _ZN13PeptideString1 [13] _ZN8Material14total [119] _ZlsRSoRK8Material [117] _ZN13PeptideString1 [9] _ZN8Material16excha [1] main [134] _ZN13PeptideString4 [76] _ZN8Material16parti [68] yy_flush_buffer [26] _ZN13PeptideString5 [54] _ZN8Material7datalo [65] yy_get_next_buffer [115] _ZN13PeptideString8 [27] _ZN8MaterialC1EPK13 [59] yy_get_previous_sta [70] _ZN13PeptideString8 [24] _ZN8MaterialC1EPKc [17] yylex [111] _ZN13PeptideStringD [28] _ZN8MaterialC1Ef [30] yyparse [135] _ZN13ReactionTable1 [56] _ZN8MaterialC2EPK13 [34] [136] _ZN13ReactionTableC [77] _ZN8MaterialC2EPKc [44]