/* * Copyright (c) 1993 by Sun Microsystems, Inc. */ #pragma ident "@(#)gprof.callg.blurb 1.8 93/06/07 SMI" call graph profile: The sum of self and descendents is the major sort for this listing. function entries: index the index of the function in the call graph listing, as an aid to locating it (see below). %time the percentage of the total time of the program accounted for by this function and its descendents. self the number of seconds spent in this function itself. descendents the number of seconds spent in the descendents of this function on behalf of this function. called the number of times this function is called (other than recursive calls). self the number of times this function calls itself recursively. name the name of the function, with an indication of its membership in a cycle, if any. index the index of the function in the call graph listing, as an aid to locating it. parent listings: self* the number of seconds of this function's self time which is due to calls from this parent. descendents* the number of seconds of this function's descendent time which is due to calls from this parent. called** the number of times this function is called by this parent. This is the numerator of the fraction which divides up the function's time to its parents. total* the number of times this function was called by all of its parents. This is the denominator of the propagation fraction. parents the name of this parent, with an indication of the parent's membership in a cycle, if any. index the index of this parent in the call graph listing, as an aid in locating it. children listings: self* the number of seconds of this child's self time which is due to being called by this function. descendent* the number of seconds of this child's descendent's time which is due to being called by this function. called** the number of times this child is called by this function. This is the numerator of the propagation fraction for this child. total* the number of times this child is called by all functions. This is the denominator of the propagation fraction. children the name of this child, and an indication of its membership in a cycle, if any. index the index of this child in the call graph listing, as an aid to locating it. * these fields are omitted for parents (or children) in the same cycle as the function. If the function (or child) is a member of a cycle, the propagated times and propagation denominator represent the self time and descendent time of the cycle as a whole. ** static-only parents and children are indicated by a call count of 0. cycle listings: the cycle as a whole is listed with the same fields as a function entry. Below it are listed the members of the cycle, and their contributions to the time and call counts of the cycle. granularity: each sample hit covers 4 byte(s) for 0.00% of 915.43 seconds called/total parents index %time self descendents called+self name index called/total children [1] 51.1 0.00 467.71 _start [1] 0.03 467.68 1/1 main [2] 0.00 0.00 1/1 exit [196] 0.00 0.00 2/3 atexit [195] ----------------------------------------------- 0.03 467.68 1/1 _start [1] [2] 51.1 0.03 467.68 1 main [2] 69.08 334.67 374347/374347 _ZN8Organism4liveEv [4] 0.00 21.19 1/1 _getcwd [16] 0.00 13.35 1/1 _Z5parsePcRSo [23] 0.79 8.43 999/999 _ZN8Location11updateShareEv [33] 0.00 8.71 2/3 ctime [24] 0.00 4.47 1/1 _Z8epiloguePc [43] 0.65 2.91 998/998 _ZN8Location9decomposeEv [45] 0.08 2.81 1/1 sprintf [47] 0.25 0.00 410311/412401 _ZN13BiotaIterator7getNextEv [78] 0.00 0.12 1/2 _ZN8Location14biomassSummaryEi [81] 0.02 0.06 36963/36963 _ZN9Literator6getOneEv [105] 0.01 0.06 7/7 _Z7datalogi [110] 0.00 0.02 1000/1001 _ZN8Location8WorldPopEv [138] 0.00 0.00 2013/1343554 .div [63] 0.00 0.00 1006/349624 .rem [102] 0.00 0.00 1/2 _ZN8Location15resourceSummaryEi [168] 0.00 0.00 2/11596 strncpy [121] 0.00 0.00 1/43169 atof [106] 0.00 0.00 2/218573 strlen [86] 0.00 0.00 1/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 4/4 _getopt [203] 0.00 0.00 1/52162259 __floor [28] 0.00 0.00 999/999 _ZN9Literator5resetEv [510] 0.00 0.00 5/5 _signal [538] 0.00 0.00 1/1 _getpid [597] 0.00 0.00 1/67 atoi [213] 0.00 0.00 1/1 _lstat [599] 0.00 0.00 1/1 _uname [603] 0.00 0.00 1/7 _ZlsRSoRK8Material [533] 0.00 0.00 1/3 _time [546] 0.00 0.00 1/1 _ZN9LiteratorC1Ev [591] ----------------------------------------------- [3] 44.6 407.92 0.00 internal_mcount [3] 0.00 0.00 1/3 atexit [195] ----------------------------------------------- 69.08 334.67 374347/374347 main [2] [4] 44.1 69.08 334.67 374347 _ZN8Organism4liveEv [4] 154.11 146.70 7872789/7872789 _ZN8Reaction5reactEdR8Material [5] 4.89 11.03 970005/970447 _ZN8Material16exchangeMaterialES_ [20] 7.96 0.00 5296041/13300626 _ZN6VectorIfEC2ERKS0_ [18] 3.10 0.00 2563239/42783706 _ZN6VectorIfEC2Eif [8] 0.36 1.69 1217226/1341501 _ZN6z1_Rnd4Gen1Ev [53] 1.53 0.00 9357317/9357317 _ZN12Protopeptide6effectEiR5EnVarR8Material [55] 0.96 0.00 929161/929161 _ZN10Chromosome9findCodonEi [64] 0.01 0.45 765/765 _ZN8OrganismC1ERS_P10Chromosome [73] 0.01 0.40 765/1638 _ZN10ChromosomeC1ERS_d [66] 0.36 0.00 1547780/52162259 __floor [28] 0.20 0.00 921013/5652624 .umul [62] 0.18 0.00 1979542/7398100 tolower [70] 0.18 0.00 819999/6101003 __ceil [56] 0.03 0.15 273333/273775 _ZN8Location11removeBiotaEP8Organism [84] 0.00 0.13 442/442 _ZN8Organism3dieEv [90] 0.02 0.04 69155/137936 _ZN8Position5moveSEii [109] 0.02 0.04 68781/137936 _ZN8Position5moveWEii [115] 0.05 0.01 765/36698 _ZN8Material14totalDecomposeEv [52] 0.03 0.00 274098/283037 _ZN8BaseList7prependEPv [128] 0.01 0.00 69670/135397 _ZN8Position5moveEEii [139] 0.01 0.00 65727/135397 _ZN8Position5moveNEii [166] 0.00 0.00 20015/20888 _ZN10Chromosome14nextGeneOffsetEi [505] ----------------------------------------------- 154.11 146.70 7872789/7872789 _ZN8Organism4liveEv [4] [5] 32.9 154.11 146.70 7872789 _ZN8Reaction5reactEdR8Material [5] 64.52 20.19 21511360/21511360 _ZN8Reaction12equilibriumPER8Material [6] 47.12 0.00 38906960/42783706 _ZN6VectorIfEC2Eif [8] 11.84 0.00 7872789/13300626 _ZN6VectorIfEC2ERKS0_ [18] 2.71 0.00 11678811/52162259 __floor [28] 0.33 0.00 1469048/6101003 __ceil [56] ----------------------------------------------- 64.52 20.19 21511360/21511360 _ZN8Reaction5reactEdR8Material [5] [6] 9.3 64.52 20.19 21511360 _ZN8Reaction12equilibriumPER8Material [6] 18.41 1.78 73244983/73244983 __pow [17] ----------------------------------------------- 0.30 2.27 2/46 yy_flex_alloc [51] 0.30 2.27 2/46 _getextmntent [44] 0.30 2.27 2/46 _strdup [50] 0.44 3.40 3/46 tzcpy [41] 0.59 4.53 4/46 _opendir [42] 0.89 6.80 6/46 calloc [38] 3.99 30.60 27/46 _findbuf [11] [7] 6.4 6.79 52.13 46 malloc [7] 14.62 25.98 56606313/56606313 _malloc_unlocked [10] 3.55 2.30 56606313/113629963 mutex_lock [29] 3.39 2.30 56606313/113629963 mutex_unlock [30] ----------------------------------------------- 0.00 0.00 1/42783706 main [2] 0.00 0.00 1/42783706 _ZN8MaterialC2EPKc [172] 0.00 0.00 6/42783706 _Z5parsePcRSo [23] 0.00 0.00 71/42783706 _ZN8MaterialC2Ef [176] 0.00 0.00 122/42783706 _ZN8Location15resourceSummaryEi [168] 0.00 0.00 216/42783706 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.00 0.00 541/42783706 _ZN8Location14biomassSummaryEi [81] 0.00 0.00 981/42783706 _ZN8MaterialC1EPK13PeptideString [80] 0.00 0.00 1638/42783706 _ZN10ChromosomeC1ERS_d [66] 0.00 0.00 1638/42783706 _ZN8MaterialC1EPKc [75] 0.00 0.00 2330/42783706 _ZN8MaterialC2EPK13PeptideString [125] 0.00 0.00 3060/42783706 _ZN8OrganismC1ERS_P10Chromosome [73] 0.04 0.00 35928/42783706 _ZN8Location9decomposeEv [45] 0.08 0.00 63036/42783706 _ZN8MaterialC1Ef [88] 0.28 0.00 233491/42783706 _ZN8Material14totalDecomposeEv [52] 1.18 0.00 970447/42783706 _ZN8Material16exchangeMaterialES_ [20] 3.10 0.00 2563239/42783706 _ZN8Organism4liveEv [4] 47.12 0.00 38906960/42783706 _ZN8Reaction5reactEdR8Material [5] [8] 5.7 51.81 0.00 42783706 _ZN6VectorIfEC2Eif [8] ----------------------------------------------- [9] 4.4 14.62 25.98 56606313+165425 [9] 14.59 25.98 56607483 _malloc_unlocked [10] 0.03 0.00 164255 _smalloc [130] ----------------------------------------------- 1170 _smalloc [130] 14.62 25.98 56606313/56606313 malloc [7] [10] 4.4 14.59 25.98 56607483 _malloc_unlocked [10] 5.25 8.49 27121676/27121676 cleanfree [22] 4.57 1.78 20194423/47220460 realfree [21] 2.09 3.79 18950529/32374507 t_delete [32] 0.01 0.00 865/865 _morecore [149] 0.00 0.00 7291/27944394 t_splay [40] 164255 _smalloc [130] ----------------------------------------------- 0.00 1.24 1/28 _doprnt [49] 0.00 1.24 1/28 fgets [59] 0.00 1.24 1/28 __filbuf [57] 0.00 30.88 25/28 _wrtchk [14] [11] 3.8 0.00 34.58 28 _findbuf [11] 3.99 30.60 27/46 malloc [7] 0.00 0.00 27/66 _isatty [183] 0.00 0.00 28/28 _setbufend [524] 0.00 0.00 27/35 _fstat64 [521] ----------------------------------------------- [12] 3.7 0.05 33.78 fwrite [12] 0.05 33.73 111948/111948 _fwrite_unlocked [13] 0.00 0.00 25/28 _setorientation [525] ----------------------------------------------- 0.05 33.73 111948/111948 fwrite [12] [13] 3.7 0.05 33.73 111948 _fwrite_unlocked [13] 0.00 30.88 25/25 _wrtchk [14] 2.80 0.00 109655/111949 _write [48] 0.03 0.00 109655/109696 _fileno [131] 0.02 0.00 109655/109699 .udiv [147] 0.00 0.00 2292/259359 _memcpy [92] ----------------------------------------------- 0.00 30.88 25/25 _fwrite_unlocked [13] [14] 3.4 0.00 30.88 25 _wrtchk [14] 0.00 30.88 25/28 _findbuf [11] 0.00 0.00 24/2605 _realbufend [158] ----------------------------------------------- 0.30 1.23 2/32 tzcpy [41] 0.61 2.46 4/32 _closedir [46] 3.94 15.96 26/32 fclose [19] [15] 2.7 4.85 19.65 32 free [15] 8.13 0.01 56511876/56511876 _free_unlocked [36] 3.54 2.29 56511876/113629963 mutex_lock [29] 3.38 2.29 56511876/113629963 mutex_unlock [30] ----------------------------------------------- 0.00 21.19 1/1 main [2] [16] 2.3 0.00 21.19 1 _getcwd [16] 0.00 10.44 1/1 getdevinfo [31] 0.00 5.12 4/4 _opendir [42] 0.00 3.06 4/4 _closedir [46] 0.00 1.28 1/2 _strdup [50] 0.00 1.28 1/6 calloc [38] 0.00 0.00 6/4184 strcpy [136] 0.00 0.00 4/11596 strncpy [121] 0.00 0.00 2/218573 strlen [86] 0.00 0.00 1/113629963 mutex_lock [29] 0.00 0.00 1/113629963 mutex_unlock [30] 0.00 0.00 39/39 _readdir64 [516] 0.00 0.00 7/7 prepend [222] 0.00 0.00 4/39 strncmp [218] 0.00 0.00 4/35 _fstat64 [521] 0.00 0.00 2/2 _stat64 [560] 0.00 0.00 1/1 _pathconf [600] ----------------------------------------------- 18.41 1.78 73244983/73244983 _ZN8Reaction12equilibriumPER8Material [6] [17] 2.2 18.41 1.78 73244983 __pow [17] 1.78 0.00 2664318/2664318 log2_x [54] ----------------------------------------------- 0.00 0.00 1/13300626 _ZN8Material16partialDecomposeEd [177] 0.00 0.00 15/13300626 _ZN10ChromosomeC1ERS_d [66] 0.00 0.00 36/13300626 _Z5parsePcRSo [23] 0.00 0.00 120/13300626 _ZN8Location15resourceSummaryEi [168] 0.00 0.00 432/13300626 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.00 0.00 442/13300626 _ZN8Organism3dieEv [90] 0.00 0.00 1530/13300626 _ZN8OrganismC1ERS_P10Chromosome [73] 0.01 0.00 3348/13300626 _ZN4GeneC1ERS_i [163] 0.19 0.00 125872/13300626 _ZN8Location9decomposeEv [45] 7.96 0.00 5296041/13300626 _ZN8Organism4liveEv [4] 11.84 0.00 7872789/13300626 _ZN8Reaction5reactEdR8Material [5] [18] 2.2 20.00 0.00 13300626 _ZN6VectorIfEC2ERKS0_ [18] ----------------------------------------------- 0.00 6.63 1/3 getdevinfo [31] 0.00 13.27 2/3 _Z5parsePcRSo [23] [19] 2.2 0.00 19.90 3 fclose [19] 3.94 15.96 26/32 free [15] 0.00 0.00 27/85581 _fflush_u [104] 0.00 0.00 27/32 _close [522] ----------------------------------------------- 0.00 0.01 442/970447 _ZN8Organism3dieEv [90] 4.89 11.03 970005/970447 _ZN8Organism4liveEv [4] [20] 1.7 4.89 11.03 970447 _ZN8Material16exchangeMaterialES_ [20] 9.01 0.00 38852796/52162259 __floor [28] 1.18 0.00 970447/42783706 _ZN6VectorIfEC2Eif [8] 0.85 0.00 3811956/6101003 __ceil [56] ----------------------------------------------- 0.01 0.00 30079/47220460 _free_unlocked [36] 4.57 1.78 20194423/47220460 _malloc_unlocked [10] 6.11 2.38 26995958/47220460 cleanfree [22] [21] 1.6 10.68 4.17 47220460 realfree [21] 1.48 2.69 13423978/32374507 t_delete [32] ----------------------------------------------- 5.25 8.49 27121676/27121676 _malloc_unlocked [10] [22] 1.5 5.25 8.49 27121676 cleanfree [22] 6.11 2.38 26995958/47220460 realfree [21] ----------------------------------------------- 0.00 13.35 1/1 main [2] [23] 1.5 0.00 13.35 1 _Z5parsePcRSo [23] 0.00 13.27 2/3 fclose [19] 0.00 0.07 108/108 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.00 0.01 1/1 _ZN10ChromosomeC1EPc [162] 0.00 0.00 66/4184 strcpy [136] 0.00 0.00 1/1 _ZN13ReactionTable10initializeEPfPd [170] 0.00 0.00 71/71 _ZN8MaterialC2Ef [176] 0.00 0.00 1/1 _ZN8Material16partialDecomposeEd [177] 0.00 0.00 1/36698 _ZN8Material14totalDecomposeEv [52] 0.00 0.00 36/13300626 _ZN6VectorIfEC2ERKS0_ [18] 0.00 0.00 66/218573 strlen [86] 0.00 0.00 37/37 rewind [179] 0.00 0.00 108/283037 _ZN8BaseList7prependEPv [128] 0.00 0.00 38/5652624 .umul [62] 0.00 0.00 6/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 1/2 fopen [190] 0.00 0.00 36/36 _ZN5EnVar11setDefaultsEPd [518] 0.00 0.00 36/36 _ZN5EnVarC1ERKS_ [519] 0.00 0.00 36/36 _ZN6VectorIfEaSERKS0_ [520] 0.00 0.00 4/7 _ZlsRSoRK8Material [533] 0.00 0.00 1/1 _ZN13PeptideString4initEi [589] ----------------------------------------------- 0.00 4.35 1/3 _Z8epiloguePc [43] 0.00 8.71 2/3 main [2] [24] 1.4 0.00 13.06 3 ctime [24] 0.00 13.06 3/3 localtime [25] 0.00 0.00 3/3 asctime [224] ----------------------------------------------- 0.00 13.06 3/3 ctime [24] [25] 1.4 0.00 13.06 3 localtime [25] 0.00 13.06 3/3 localtime_u [26] ----------------------------------------------- 0.00 13.06 3/3 localtime [25] [26] 1.4 0.00 13.06 3 localtime_u [26] 0.00 13.06 3/3 _ltzset_u [27] 0.00 0.00 6/6 offtime_u [223] ----------------------------------------------- 0.00 13.06 3/3 localtime_u [26] [27] 1.4 0.00 13.06 3 _ltzset_u [27] 0.00 7.69 3/3 _tzload [37] 0.00 5.30 204/207 tzcpy [41] 0.00 0.08 3/3 getzname [107] 0.00 0.00 3/4184 strcpy [136] 0.00 0.00 6/6 getsystemTZ [194] 0.00 0.00 3/3 gettime [226] ----------------------------------------------- 0.00 0.00 1/52162259 main [2] 0.00 0.00 1638/52162259 _ZN10ChromosomeC1ERS_d [66] 0.02 0.00 81233/52162259 _ZN8Location9decomposeEv [45] 0.36 0.00 1547780/52162259 _ZN8Organism4liveEv [4] 2.71 0.00 11678811/52162259 _ZN8Reaction5reactEdR8Material [5] 9.01 0.00 38852796/52162259 _ZN8Material16exchangeMaterialES_ [20] [28] 1.3 12.09 0.00 52162259 __floor [28] ----------------------------------------------- 0.00 0.00 1/113629963 _getcwd [16] 0.00 0.00 1/113629963 _resetmnttab [205] 0.00 0.00 1/113629963 check_nlspath_env [204] 0.00 0.00 2/113629963 free_mem [199] 0.00 0.00 3/113629963 atexit [195] 0.00 0.00 3/113629963 get_mem [198] 0.00 0.00 4/113629963 _exithandle [197] 0.00 0.00 6/113629963 getenv [193] 0.00 0.00 9/113629963 _getextmntent [44] 0.00 0.00 1730/113629963 _sbrk [169] 0.03 0.02 510014/113629963 _real_setlocale [69] 3.54 2.29 56511876/113629963 free [15] 3.55 2.30 56606313/113629963 malloc [7] [29] 1.3 7.12 4.61 113629963 mutex_lock [29] 4.61 0.00 113629964/227259943 _return_zero [34] ----------------------------------------------- 0.00 0.00 1/113629963 _getcwd [16] 0.00 0.00 1/113629963 _resetmnttab [205] 0.00 0.00 1/113629963 check_nlspath_env [204] 0.00 0.00 2/113629963 free_mem [199] 0.00 0.00 3/113629963 atexit [195] 0.00 0.00 3/113629963 get_mem [198] 0.00 0.00 4/113629963 _exithandle [197] 0.00 0.00 6/113629963 getenv [193] 0.00 0.00 9/113629963 _getextmntent [44] 0.00 0.00 1730/113629963 _sbrk [169] 0.03 0.02 510014/113629963 _real_setlocale [69] 3.38 2.29 56511876/113629963 free [15] 3.39 2.30 56606313/113629963 malloc [7] [30] 1.2 6.80 4.61 113629963 mutex_unlock [30] 4.61 0.00 113629964/227259943 _return_zero [34] ----------------------------------------------- 0.00 10.44 1/1 _getcwd [16] [31] 1.1 0.00 10.44 1 getdevinfo [31] 0.00 6.63 1/3 fclose [19] 0.00 3.81 9/9 _getextmntent [44] 0.00 0.00 9/9 _hasmntopt [175] 0.00 0.00 1/4184 strcpy [136] 0.00 0.00 1/2 fopen [190] 0.00 0.00 1/1 _resetmnttab [205] 0.00 0.00 9/9 isdevice [221] 0.00 0.00 2/2 _lstat64 [559] 0.00 0.00 1/127 strcat [211] 0.00 0.00 1/1 strrchr [228] ----------------------------------------------- 1.48 2.69 13423978/32374507 realfree [21] 2.09 3.79 18950529/32374507 _malloc_unlocked [10] [32] 1.1 3.57 6.48 32374507 t_delete [32] 6.48 0.00 27937103/27944394 t_splay [40] ----------------------------------------------- 0.79 8.43 999/999 main [2] [33] 1.0 0.79 8.43 999 _ZN8Location11updateShareEv [33] 1.48 6.70 284702/285575 _ZN8Organism20calculateUptakeRatesEv [35] 0.06 0.11 35964/35964 _ZN8Location9updateEnvEv [85] 0.01 0.05 36963/1341501 _ZN6z1_Rnd4Gen1Ev [53] 0.02 0.00 35964/72000 _ZN8BaseList6lengthEv [118] ----------------------------------------------- 0.00 0.00 1/227259943 _pthread_once [208] 0.00 0.00 7/227259943 pthread_mutex_lock [201] 0.00 0.00 7/227259943 _pthread_mutex_unlock [202] 4.61 0.00 113629964/227259943 mutex_lock [29] 4.61 0.00 113629964/227259943 mutex_unlock [30] [34] 1.0 9.22 0.00 227259943 _return_zero [34] ----------------------------------------------- 0.00 0.00 108/285575 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.00 0.02 765/285575 _ZN8OrganismC1ERS_P10Chromosome [73] 1.48 6.70 284702/285575 _ZN8Location11updateShareEv [33] [35] 0.9 1.48 6.72 285575 _ZN8Organism20calculateUptakeRatesEv [35] 6.66 0.00 285575/286448 _ZN8Organism21calculateEfficienciesEv [39] 0.06 0.00 285575/5652624 .umul [62] ----------------------------------------------- 8.13 0.01 56511876/56511876 free [15] [36] 0.9 8.13 0.01 56511876 _free_unlocked [36] 0.01 0.00 30079/47220460 realfree [21] ----------------------------------------------- 0.00 7.69 3/3 _ltzset_u [27] [37] 0.8 0.00 7.69 3 _tzload [37] 0.00 6.40 5/6 calloc [38] 0.00 1.28 1/2 _strdup [50] 0.00 0.00 3/4184 strcpy [136] 0.00 0.00 6/218573 strlen [86] 0.00 0.00 146/146 detzcode [210] 0.00 0.00 6/127 strcat [211] 0.00 0.00 2/50 strcmp [215] 0.00 0.00 1/27 _libc_open [527] 0.00 0.00 1/269 _read [512] 0.00 0.00 1/32 _close [522] ----------------------------------------------- 0.00 1.28 1/6 _getcwd [16] 0.00 6.40 5/6 _tzload [37] [38] 0.8 0.00 7.69 6 calloc [38] 0.89 6.80 6/46 malloc [7] 0.00 0.00 6/5652624 .umul [62] 0.00 0.00 6/109699 .udiv [147] 0.00 0.00 6/55565 _memset [153] ----------------------------------------------- 0.00 0.00 108/286448 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.02 0.00 765/286448 _ZN8OrganismC1ERS_P10Chromosome [73] 6.66 0.00 285575/286448 _ZN8Organism20calculateUptakeRatesEv [35] [39] 0.7 6.68 0.00 286448 _ZN8Organism21calculateEfficienciesEv [39] ----------------------------------------------- 0.00 0.00 7291/27944394 _malloc_unlocked [10] 6.48 0.00 27937103/27944394 t_delete [32] [40] 0.7 6.48 0.00 27944394 t_splay [40] ----------------------------------------------- 0.00 0.08 3/207 getzname [107] 0.00 5.30 204/207 _ltzset_u [27] [41] 0.6 0.00 5.37 207 tzcpy [41] 0.44 3.40 3/46 malloc [7] 0.30 1.23 2/32 free [15] 0.00 0.00 207/11596 strncpy [121] 0.00 0.00 411/218573 strlen [86] ----------------------------------------------- 0.00 5.12 4/4 _getcwd [16] [42] 0.6 0.00 5.12 4 _opendir [42] 0.59 4.53 4/46 malloc [7] 0.00 0.00 4/4 _libc_open64 [542] 0.00 0.00 4/4 _libc_fcntl [541] 0.00 0.00 4/35 _fstat64 [521] ----------------------------------------------- 0.00 4.47 1/1 main [2] [43] 0.5 0.00 4.47 1 _Z8epiloguePc [43] 0.00 4.35 1/3 ctime [24] 0.00 0.12 1/2 _ZN8Location14biomassSummaryEi [81] 0.00 0.00 1/2 _ZN8Location15resourceSummaryEi [168] 0.00 0.00 1/1001 _ZN8Location8WorldPopEv [138] 0.00 0.00 1/4184 strcpy [136] 0.00 0.00 2/7 _ZlsRSoRK8Material [533] 0.00 0.00 1/3 _time [546] 0.00 0.00 1/8 _ZlsRSoRK4Date [532] ----------------------------------------------- 0.00 3.81 9/9 getdevinfo [31] [44] 0.4 0.00 3.81 9 _getextmntent [44] 0.30 2.27 2/46 malloc [7] 0.00 1.24 9/9 getline [58] 0.00 0.00 9/113629963 mutex_lock [29] 0.00 0.00 9/113629963 mutex_unlock [30] 0.00 0.00 9/510222 thr_main [116] 0.00 0.00 2/109696 _fileno [131] 0.00 0.00 54/54 _strtok_r [515] 0.00 0.00 45/50 strcmp [215] 0.00 0.00 2/68 _ioctl [514] ----------------------------------------------- 0.65 2.91 998/998 main [2] [45] 0.4 0.65 2.91 998 _ZN8Location9decomposeEv [45] 2.19 0.28 35928/36698 _ZN8Material14totalDecomposeEv [52] 0.19 0.00 125872/13300626 _ZN6VectorIfEC2ERKS0_ [18] 0.04 0.05 44972/63036 _ZN8MaterialC1Ef [88] 0.01 0.05 36926/1341501 _ZN6z1_Rnd4Gen1Ev [53] 0.04 0.00 35928/42783706 _ZN6VectorIfEC2Eif [8] 0.02 0.00 89944/109466 _ZN6VectorIfED2Ev [132] 0.02 0.00 81233/52162259 __floor [28] 0.00 0.00 8711/282486 _ZN8BaseList6removeEPv [117] 0.00 0.00 8711/8711 _ZN4ListIP7ProteinE4findES1_ [507] ----------------------------------------------- 0.00 3.06 4/4 _getcwd [16] [46] 0.3 0.00 3.06 4 _closedir [46] 0.61 2.46 4/32 free [15] 0.00 0.00 4/32 _close [522] ----------------------------------------------- 0.08 2.81 1/1 main [2] [47] 0.3 0.08 2.81 1 sprintf [47] 0.59 2.22 255008/255019 _doprnt [49] ----------------------------------------------- 0.06 0.00 2294/111949 _xflsbuf [108] 2.80 0.00 109655/111949 _fwrite_unlocked [13] [48] 0.3 2.86 0.00 111949 _write [48] ----------------------------------------------- 0.00 0.00 11/255019 printf [173] 0.59 2.22 255008/255019 sprintf [47] [49] 0.3 0.59 2.22 255019 _doprnt [49] 0.00 1.24 1/28 _findbuf [11] 0.12 0.69 214058/214058 _econvert [68] 0.15 0.00 214069/218573 strlen [86] 0.03 0.00 70147/259359 _memcpy [92] 0.00 0.00 12/2605 _realbufend [158] 0.00 0.00 255019/255030 _ferror_unlocked [501] 0.00 0.00 19736/19835 .mul [209] ----------------------------------------------- 0.00 1.28 1/2 _getcwd [16] 0.00 1.28 1/2 _tzload [37] [50] 0.3 0.00 2.56 2 _strdup [50] 0.30 2.27 2/46 malloc [7] 0.00 0.00 2/4184 strcpy [136] 0.00 0.00 2/218573 strlen [86] ----------------------------------------------- [51] 0.3 0.00 2.56 yy_flex_alloc [51] 0.30 2.27 2/46 malloc [7] ----------------------------------------------- 0.00 0.00 1/36698 _ZN8Location14biomassSummaryEi [81] 0.00 0.00 1/36698 _Z5parsePcRSo [23] 0.00 0.00 1/36698 _ZN8Material16partialDecomposeEd [177] 0.00 0.00 2/36698 _ZN8Location15resourceSummaryEi [168] 0.05 0.01 765/36698 _ZN8Organism4liveEv [4] 2.19 0.28 35928/36698 _ZN8Location9decomposeEv [45] [52] 0.3 2.24 0.28 36698 _ZN8Material14totalDecomposeEv [52] 0.28 0.00 233491/42783706 _ZN6VectorIfEC2Eif [8] ----------------------------------------------- 0.00 0.00 2763/1341501 _ZN3Urn4drawEv [164] 0.00 0.01 4943/1341501 _ZN10ChromosomeC1ERS_d [66] 0.00 0.01 5717/1341501 _ZN13PeptideString10mutateOnceER8mutret_t [100] 0.01 0.05 36926/1341501 _ZN8Location9decomposeEv [45] 0.01 0.05 36963/1341501 _ZN8Location11updateShareEv [33] 0.01 0.05 36963/1341501 _ZN9Literator6getOneEv [105] 0.36 1.69 1217226/1341501 _ZN8Organism4liveEv [4] [53] 0.2 0.40 1.87 1341501 _ZN6z1_Rnd4Gen1Ev [53] 1.00 0.00 1341541/1343554 .div [63] 0.87 0.00 4024623/5652624 .umul [62] ----------------------------------------------- 1.78 0.00 2664318/2664318 __pow [17] [54] 0.2 1.78 0.00 2664318 log2_x [54] ----------------------------------------------- 1.53 0.00 9357317/9357317 _ZN8Organism4liveEv [4] [55] 0.2 1.53 0.00 9357317 _ZN12Protopeptide6effectEiR5EnVarR8Material [55] ----------------------------------------------- 0.18 0.00 819999/6101003 _ZN8Organism4liveEv [4] 0.33 0.00 1469048/6101003 _ZN8Reaction5reactEdR8Material [5] 0.85 0.00 3811956/6101003 _ZN8Material16exchangeMaterialES_ [20] [56] 0.1 1.36 0.00 6101003 __ceil [56] ----------------------------------------------- 0.00 0.01 2/268 fgets [59] 0.01 1.23 266/268 fread [60] [57] 0.1 0.01 1.24 268 __filbuf [57] 0.00 1.24 1/28 _findbuf [11] 0.00 0.00 267/2605 _realbufend [158] 0.00 0.00 268/269 _read [512] ----------------------------------------------- 0.00 1.24 9/9 _getextmntent [44] [58] 0.1 0.00 1.24 9 getline [58] 0.00 1.24 9/9 fgets [59] 0.00 0.00 9/218573 strlen [86] ----------------------------------------------- 0.00 1.24 9/9 getline [58] [59] 0.1 0.00 1.24 9 fgets [59] 0.00 1.24 1/28 _findbuf [11] 0.00 0.01 2/268 __filbuf [57] 0.00 0.00 8/2605 _realbufend [158] 0.00 0.00 10/10 _memccpy [530] 0.00 0.00 1/28 _setorientation [525] ----------------------------------------------- 0.00 1.24 266/266 yy_get_next_buffer [61] [60] 0.1 0.00 1.24 266 fread [60] 0.01 1.23 266/268 __filbuf [57] 0.00 0.00 228/259359 _memcpy [92] 0.00 0.00 38/109699 .udiv [147] 0.00 0.00 1/28 _setorientation [525] ----------------------------------------------- [61] 0.1 0.00 1.24 yy_get_next_buffer [61] 0.00 1.24 266/266 fread [60] ----------------------------------------------- 0.00 0.00 6/5652624 calloc [38] 0.00 0.00 7/5652624 _Z7datalogi [110] 0.00 0.00 38/5652624 _Z5parsePcRSo [23] 0.00 0.00 442/5652624 _ZN8Organism3dieEv [90] 0.00 0.00 1470/5652624 _ZN13ReactionTable10initializeEPfPd [170] 0.00 0.00 5880/5652624 yyparse [82] 0.01 0.00 40050/5652624 __longquorem10000 [160] 0.06 0.00 285575/5652624 _ZN8Organism20calculateUptakeRatesEv [35] 0.08 0.00 373520/5652624 __quorem10000 [97] 0.20 0.00 921013/5652624 _ZN8Organism4liveEv [4] 0.87 0.00 4024623/5652624 _ZN6z1_Rnd4Gen1Ev [53] [62] 0.1 1.22 0.00 5652624 .umul [62] ----------------------------------------------- 0.00 0.00 2013/1343554 main [2] 1.00 0.00 1341541/1343554 _ZN6z1_Rnd4Gen1Ev [53] [63] 0.1 1.00 0.00 1343554 .div [63] ----------------------------------------------- 0.96 0.00 929161/929161 _ZN8Organism4liveEv [4] [64] 0.1 0.96 0.00 929161 _ZN10Chromosome9findCodonEi [64] ----------------------------------------------- [65] 0.1 0.78 0.11 yylex [65] 0.01 0.07 43168/43169 atof [106] 0.03 0.00 8892/11596 strncpy [121] 0.00 0.00 418/510501 strchr [120] ----------------------------------------------- 0.00 0.06 108/1638 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.01 0.40 765/1638 _ZN8Organism4liveEv [4] 0.01 0.40 765/1638 _ZN8OrganismC1ERS_P10Chromosome [73] [66] 0.1 0.02 0.85 1638 _ZN10ChromosomeC1ERS_d [66] 0.01 0.36 2299/2330 _ZN4GeneC1EP13PeptideStringiiii [74] 0.12 0.24 1638/1638 _ZN8MaterialC1EPKc [75] 0.08 0.01 2763/2763 _ZN13PeptideString10mutateOnceER8mutret_t [100] 0.01 0.00 1638/4184 strcpy [136] 0.00 0.01 4943/1341501 _ZN6z1_Rnd4Gen1Ev [53] 0.00 0.00 1638/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 1638/52162259 __floor [28] 0.00 0.00 15/15 _ZN13PeptideString11prependGeneEPS_ [174] 0.00 0.00 15/2345 _ZNK13PeptideString9subStringEii [161] 0.00 0.00 14/14 _ZN13PeptideString11replaceGeneEiiPS_ [178] 0.00 0.00 15/13300626 _ZN6VectorIfEC2ERKS0_ [18] ----------------------------------------------- [67] 0.1 0.08 0.74 _setlocale [67] 0.34 0.35 510014/510014 _real_setlocale [69] 0.04 0.01 510014/510222 thr_main [116] ----------------------------------------------- 0.12 0.69 214058/214058 _doprnt [49] [68] 0.1 0.12 0.69 214058 _econvert [68] 0.02 0.65 214058/214058 _double_to_decimal [71] 0.02 0.00 214058/257227 _QgetRD [142] ----------------------------------------------- 0.34 0.35 510014/510014 _setlocale [67] [69] 0.1 0.34 0.35 510014 _real_setlocale [69] 0.12 0.13 510014/510014 load_all_locales [79] 0.03 0.02 510014/113629963 mutex_lock [29] 0.03 0.02 510014/113629963 mutex_unlock [30] ----------------------------------------------- 0.00 0.00 442/7398100 _ZN8Organism3dieEv [90] 0.00 0.00 1548/7398100 _ZN8MaterialC2EPKc [172] 0.01 0.00 98064/7398100 _ZN8MaterialC2EPK13PeptideString [125] 0.12 0.00 1263935/7398100 _ZN13PeptideString5matchEPS_i [77] 0.14 0.00 1518718/7398100 _ZN8MaterialC1EPK13PeptideString [80] 0.18 0.00 1979542/7398100 _ZN8Organism4liveEv [4] 0.24 0.00 2535851/7398100 _ZN8MaterialC1EPKc [75] [70] 0.1 0.69 0.00 7398100 tolower [70] ----------------------------------------------- 0.02 0.65 214058/214058 _econvert [68] [71] 0.1 0.02 0.65 214058 _double_to_decimal [71] 0.14 0.46 131159/131159 __k_double_to_decimal [72] 0.03 0.00 214058/214058 __class_double [129] 0.02 0.00 67356/68383 __base_conversion_set_exception [145] ----------------------------------------------- 0.14 0.46 131159/131159 _double_to_decimal [71] [72] 0.1 0.14 0.46 131159 __k_double_to_decimal [72] 0.04 0.15 55533/55533 _unpacked_to_decimal_two [83] 0.03 0.11 75626/75626 __double_to_digits [87] 0.03 0.04 55533/55533 __unpack_double_two [111] 0.03 0.00 75626/259359 _memcpy [92] 0.02 0.00 186692/186692 __arint_set_n [143] 0.02 0.00 131159/167260 __get_ieee_flags [144] 0.00 0.00 131159/167260 __set_ieee_flags [502] ----------------------------------------------- 0.01 0.45 765/765 _ZN8Organism4liveEv [4] [73] 0.1 0.01 0.45 765 _ZN8OrganismC1ERS_P10Chromosome [73] 0.01 0.40 765/1638 _ZN10ChromosomeC1ERS_d [66] 0.00 0.02 765/285575 _ZN8Organism20calculateUptakeRatesEv [35] 0.02 0.00 765/286448 _ZN8Organism21calculateEfficienciesEv [39] 0.00 0.00 3060/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 1530/13300626 _ZN6VectorIfEC2ERKS0_ [18] 0.00 0.00 765/20888 _ZN10Chromosome14nextGeneOffsetEi [505] ----------------------------------------------- 0.00 0.00 31/2330 _ZN10ChromosomeC1EPc [162] 0.01 0.36 2299/2330 _ZN10ChromosomeC1ERS_d [66] [74] 0.0 0.01 0.37 2330 _ZN4GeneC1EP13PeptideStringiiii [74] 0.03 0.30 2330/2330 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [76] 0.02 0.01 2330/2330 _ZN8MaterialC2EPK13PeptideString [125] 0.00 0.01 2330/2345 _ZNK13PeptideString9subStringEii [161] ----------------------------------------------- 0.12 0.24 1638/1638 _ZN10ChromosomeC1ERS_d [66] [75] 0.0 0.12 0.24 1638 _ZN8MaterialC1EPKc [75] 0.24 0.00 2535851/7398100 tolower [70] 0.00 0.00 1638/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 1638/218573 strlen [86] ----------------------------------------------- 0.03 0.30 2330/2330 _ZN4GeneC1EP13PeptideStringiiii [74] [76] 0.0 0.03 0.30 2330 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [76] 0.13 0.15 153780/153780 _ZN13PeptideString5matchEPS_i [77] 0.02 0.00 2330/4184 strcpy [136] 0.00 0.00 2330/218573 strlen [86] 0.00 0.00 2330/2330 _ZN13PeptideString8skipGeneEPci [508] ----------------------------------------------- 0.13 0.15 153780/153780 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [76] [77] 0.0 0.13 0.15 153780 _ZN13PeptideString5matchEPS_i [77] 0.12 0.00 1263935/7398100 tolower [70] 0.03 0.00 591125/591125 isupper [126] ----------------------------------------------- 0.00 0.00 2090/412401 _Z7datalogi [110] 0.25 0.00 410311/412401 main [2] [78] 0.0 0.25 0.00 412401 _ZN13BiotaIterator7getNextEv [78] ----------------------------------------------- 0.12 0.13 510014/510014 _real_setlocale [69] [79] 0.0 0.12 0.13 510014 load_all_locales [79] 0.09 0.04 510014/510014 expand_locale_name [89] ----------------------------------------------- 0.05 0.06 442/981 _ZN8Organism3dieEv [90] 0.05 0.08 539/981 _ZN8Location14biomassSummaryEi [81] [80] 0.0 0.10 0.14 981 _ZN8MaterialC1EPK13PeptideString [80] 0.14 0.00 1518718/7398100 tolower [70] 0.00 0.00 981/42783706 _ZN6VectorIfEC2Eif [8] ----------------------------------------------- 0.00 0.12 1/2 _Z8epiloguePc [43] 0.00 0.12 1/2 main [2] [81] 0.0 0.00 0.24 2 _ZN8Location14biomassSummaryEi [81] 0.05 0.08 539/981 _ZN8MaterialC1EPK13PeptideString [80] 0.06 0.04 16986/16986 _ZNK8MaterialmlEf [99] 0.01 0.00 18603/109466 _ZN6VectorIfED2Ev [132] 0.00 0.00 1078/1078 _ZNK8MaterialplERKS_ [167] 0.00 0.00 541/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 1/36698 _ZN8Material14totalDecomposeEv [52] 0.00 0.00 18064/18064 _ZN8MaterialpLERKS_ [506] ----------------------------------------------- [82] 0.0 0.19 0.00 yyparse [82] 0.00 0.00 5880/5652624 .umul [62] 0.00 0.00 132/11596 strncpy [121] 0.00 0.00 11/11 printf [173] 0.00 0.00 66/510501 strchr [120] 0.00 0.00 91/127 strcat [211] 0.00 0.00 66/67 atoi [213] ----------------------------------------------- 0.04 0.15 55533/55533 __k_double_to_decimal [72] [83] 0.0 0.04 0.15 55533 _unpacked_to_decimal_two [83] 0.04 0.05 55533/55533 __binary_to_decimal_integer [101] 0.05 0.00 111066/259359 _memcpy [92] 0.00 0.01 55533/55533 __binary_to_decimal_fraction [159] 0.00 0.00 55533/55533 __decimal_round [503] ----------------------------------------------- 0.00 0.00 442/273775 _ZN8Organism3dieEv [90] 0.03 0.15 273333/273775 _ZN8Organism4liveEv [4] [84] 0.0 0.03 0.15 273775 _ZN8Location11removeBiotaEP8Organism [84] 0.10 0.00 547550/547550 _ZN4ListIP8OrganismE4findES1_ [98] 0.05 0.00 273775/282486 _ZN8BaseList6removeEPv [117] ----------------------------------------------- 0.06 0.11 35964/35964 _ZN8Location11updateShareEv [33] [85] 0.0 0.06 0.11 35964 _ZN8Location9updateEnvEv [85] 0.05 0.06 71928/71928 _ZN8Location17calculateModifierEi [93] ----------------------------------------------- 0.00 0.00 1/218573 _ZN10ChromosomeC1EPc [162] 0.00 0.00 1/218573 _Z41__static_initialization_and_destruction_0ii [187] 0.00 0.00 1/218573 _ZN8MaterialC2EPKc [172] 0.00 0.00 2/218573 main [2] 0.00 0.00 2/218573 _getcwd [16] 0.00 0.00 2/218573 _strdup [50] 0.00 0.00 6/218573 _tzload [37] 0.00 0.00 9/218573 getline [58] 0.00 0.00 35/218573 _hasmntopt [175] 0.00 0.00 66/218573 _Z5parsePcRSo [23] 0.00 0.00 411/218573 tzcpy [41] 0.00 0.00 1638/218573 _ZN8MaterialC1EPKc [75] 0.00 0.00 2330/218573 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [76] 0.15 0.00 214069/218573 _doprnt [49] [86] 0.0 0.15 0.00 218573 strlen [86] ----------------------------------------------- 0.03 0.11 75626/75626 __k_double_to_decimal [72] [87] 0.0 0.03 0.11 75626 __double_to_digits [87] 0.01 0.06 131227/186760 __quorem10000 [97] 0.03 0.00 151252/206785 __four_digits_quick [122] 0.00 0.01 20025/20025 __longquorem10000 [160] ----------------------------------------------- 0.00 0.00 1078/63036 _ZNK8MaterialplERKS_ [167] 0.02 0.02 16986/63036 _ZNK8MaterialmlEf [99] 0.04 0.05 44972/63036 _ZN8Location9decomposeEv [45] [88] 0.0 0.06 0.08 63036 _ZN8MaterialC1Ef [88] 0.08 0.00 63036/42783706 _ZN6VectorIfEC2Eif [8] ----------------------------------------------- 0.09 0.04 510014/510014 load_all_locales [79] [89] 0.0 0.09 0.04 510014 expand_locale_name [89] 0.04 0.00 510014/510501 strchr [120] ----------------------------------------------- 0.00 0.13 442/442 _ZN8Organism4liveEv [4] [90] 0.0 0.00 0.13 442 _ZN8Organism3dieEv [90] 0.05 0.06 442/981 _ZN8MaterialC1EPK13PeptideString [80] 0.01 0.00 5255/5255 _ZN7ProteinD1Ev [156] 0.00 0.01 442/970447 _ZN8Material16exchangeMaterialES_ [20] 0.00 0.00 8831/283037 _ZN8BaseList7prependEPv [128] 0.00 0.00 442/13300626 _ZN6VectorIfEC2ERKS0_ [18] 0.00 0.00 442/273775 _ZN8Location11removeBiotaEP8Organism [84] 0.00 0.00 442/442 _ZN8OrganismD1Ev [171] 0.00 0.00 442/5652624 .umul [62] 0.00 0.00 442/7398100 tolower [70] ----------------------------------------------- [91] 0.0 0.04 0.08 137936+23133 [91] 0.03 0.04 80628 _ZN8Position5moveSEii [109] 0.01 0.04 80441 _ZN8Position5moveWEii [115] ----------------------------------------------- 0.00 0.00 228/259359 fread [60] 0.00 0.00 2292/259359 _fwrite_unlocked [13] 0.03 0.00 70147/259359 _doprnt [49] 0.03 0.00 75626/259359 __k_double_to_decimal [72] 0.05 0.00 111066/259359 _unpacked_to_decimal_two [83] [92] 0.0 0.11 0.00 259359 _memcpy [92] ----------------------------------------------- 0.05 0.06 71928/71928 _ZN8Location9updateEnvEv [85] [93] 0.0 0.05 0.06 71928 _ZN8Location17calculateModifierEi [93] 0.06 0.00 71928/71928 __log [114] ----------------------------------------------- 0.02 0.09 2/2 _cleanup [95] [94] 0.0 0.02 0.09 2 fflush [94] 0.01 0.08 85515/85581 _fflush_u [104] 0.00 0.00 2/2 _fflush_u_iops [192] ----------------------------------------------- 0.00 0.11 1/1 _fini [96] [95] 0.0 0.00 0.11 1 _cleanup [95] 0.02 0.09 2/2 fflush [94] ----------------------------------------------- [96] 0.0 0.00 0.11 _fini [96] 0.00 0.11 1/1 _cleanup [95] ----------------------------------------------- 0.01 0.02 55533/186760 __big_binary_to_big_decimal [124] 0.01 0.06 131227/186760 __double_to_digits [87] [97] 0.0 0.02 0.08 186760 __quorem10000 [97] 0.08 0.00 373520/5652624 .umul [62] ----------------------------------------------- 0.10 0.00 547550/547550 _ZN8Location11removeBiotaEP8Organism [84] [98] 0.0 0.10 0.00 547550 _ZN4ListIP8OrganismE4findES1_ [98] ----------------------------------------------- 0.06 0.04 16986/16986 _ZN8Location14biomassSummaryEi [81] [99] 0.0 0.06 0.04 16986 _ZNK8MaterialmlEf [99] 0.02 0.02 16986/63036 _ZN8MaterialC1Ef [88] ----------------------------------------------- 0.08 0.01 2763/2763 _ZN10ChromosomeC1ERS_d [66] [100] 0.0 0.08 0.01 2763 _ZN13PeptideString10mutateOnceER8mutret_t [100] 0.00 0.01 5717/1341501 _ZN6z1_Rnd4Gen1Ev [53] 0.00 0.00 2763/2763 _ZN3Urn4drawEv [164] 0.00 0.00 24/24 _ZN13PeptideString10insertCharEic [529] ----------------------------------------------- 0.04 0.05 55533/55533 _unpacked_to_decimal_two [83] [101] 0.0 0.04 0.05 55533 __binary_to_decimal_integer [101] 0.01 0.03 55533/55533 __big_binary_to_big_decimal [124] 0.01 0.00 55533/206785 __four_digits_quick [122] ----------------------------------------------- 0.00 0.00 1006/349624 main [2] 0.00 0.00 13000/349624 _ZN8Position5moveNEii [166] 0.00 0.00 13480/349624 _ZN8Position5moveEEii [139] 0.04 0.00 160882/349624 _ZN8Position5moveWEii [115] 0.04 0.00 161256/349624 _ZN8Position5moveSEii [109] [102] 0.0 0.09 0.00 349624 .rem [102] ----------------------------------------------- [103] 0.0 0.09 0.00 _brk_unlocked [103] ----------------------------------------------- 0.00 0.00 2/85581 _fflush_u_iops [192] 0.00 0.00 27/85581 fclose [19] 0.00 0.00 37/85581 _rewind_unlocked [180] 0.01 0.08 85515/85581 fflush [94] [104] 0.0 0.01 0.08 85581 _fflush_u [104] 0.01 0.07 2294/2294 _xflsbuf [108] 0.00 0.00 1/1 _cerror64 [207] 0.00 0.00 41/101 _lseek64 [513] ----------------------------------------------- 0.02 0.06 36963/36963 main [2] [105] 0.0 0.02 0.06 36963 _ZN9Literator6getOneEv [105] 0.01 0.05 36963/1341501 _ZN6z1_Rnd4Gen1Ev [53] ----------------------------------------------- 0.00 0.00 1/43169 main [2] 0.01 0.07 43168/43169 yylex [65] [106] 0.0 0.01 0.07 43169 atof [106] 0.01 0.06 43169/43169 strtod [113] ----------------------------------------------- 0.00 0.08 3/3 _ltzset_u [27] [107] 0.0 0.00 0.08 3 getzname [107] 0.00 0.08 3/207 tzcpy [41] 0.00 0.00 36/36 goodTZchar [219] ----------------------------------------------- 0.01 0.07 2294/2294 _fflush_u [104] [108] 0.0 0.01 0.07 2294 _xflsbuf [108] 0.06 0.00 2294/111949 _write [48] 0.01 0.00 2294/2605 _realbufend [158] ----------------------------------------------- 11473 _ZN8Position5moveWEii [115] 0.02 0.04 69155/137936 _ZN8Organism4liveEv [4] [109] 0.0 0.03 0.04 80628 _ZN8Position5moveSEii [109] 0.04 0.00 161256/349624 .rem [102] 11660 _ZN8Position5moveWEii [115] ----------------------------------------------- 0.01 0.06 7/7 main [2] [110] 0.0 0.01 0.06 7 _Z7datalogi [110] 0.00 0.05 1838/1838 _ZN8Organism7datalogERSo [119] 0.01 0.00 252/252 _ZN5EnVar7datalogERSo [157] 0.00 0.00 252/2090 _ZN8Material7datalogERSo [146] 0.00 0.00 2090/412401 _ZN13BiotaIterator7getNextEv [78] 0.00 0.00 7/5652624 .umul [62] 0.00 0.00 7/8 _ZlsRSoRK4Date [532] ----------------------------------------------- 0.03 0.04 55533/55533 __k_double_to_decimal [72] [111] 0.0 0.03 0.04 55533 __unpack_double_two [111] 0.00 0.03 55533/55533 _split_double_3 [133] 0.01 0.00 55533/55533 __right_shift_base_two [154] ----------------------------------------------- 0.00 0.07 108/108 _Z5parsePcRSo [23] [112] 0.0 0.00 0.07 108 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.00 0.06 108/1638 _ZN10ChromosomeC1ERS_d [66] 0.00 0.01 3348/3348 _ZN4GeneC1ERS_i [163] 0.00 0.00 108/285575 _ZN8Organism20calculateUptakeRatesEv [35] 0.00 0.00 108/286448 _ZN8Organism21calculateEfficienciesEv [39] 0.00 0.00 108/4184 strcpy [136] 0.00 0.00 432/13300626 _ZN6VectorIfEC2ERKS0_ [18] 0.00 0.00 216/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 108/20888 _ZN10Chromosome14nextGeneOffsetEi [505] ----------------------------------------------- 0.01 0.06 43169/43169 atof [106] [113] 0.0 0.01 0.06 43169 strtod [113] 0.02 0.02 43169/43169 _string_to_decimal [123] 0.01 0.00 43169/43169 _decimal_to_double [148] 0.00 0.00 43169/257227 _QgetRD [142] ----------------------------------------------- 0.06 0.00 71928/71928 _ZN8Location17calculateModifierEi [93] [114] 0.0 0.06 0.00 71928 __log [114] ----------------------------------------------- 11660 _ZN8Position5moveSEii [109] 0.02 0.04 68781/137936 _ZN8Organism4liveEv [4] [115] 0.0 0.01 0.04 80441 _ZN8Position5moveWEii [115] 0.04 0.00 160882/349624 .rem [102] 11473 _ZN8Position5moveSEii [109] ----------------------------------------------- 0.00 0.00 9/510222 _getextmntent [44] 0.00 0.00 199/510222 ___errno [182] 0.04 0.01 510014/510222 _setlocale [67] [116] 0.0 0.04 0.01 510222 thr_main [116] 0.01 0.00 510222/510222 _return_negone [152] ----------------------------------------------- 0.00 0.00 8711/282486 _ZN8Location9decomposeEv [45] 0.05 0.00 273775/282486 _ZN8Location11removeBiotaEP8Organism [84] [117] 0.0 0.05 0.00 282486 _ZN8BaseList6removeEPv [117] ----------------------------------------------- 0.02 0.00 35964/72000 _ZN8Location11updateShareEv [33] 0.03 0.00 36036/72000 _ZN8Location8WorldPopEv [138] [118] 0.0 0.05 0.00 72000 _ZN8BaseList6lengthEv [118] ----------------------------------------------- 0.00 0.05 1838/1838 _Z7datalogi [110] [119] 0.0 0.00 0.05 1838 _ZN8Organism7datalogERSo [119] 0.03 0.00 1838/1838 _ZN8Organism8dltraitsERSo [135] 0.02 0.00 1838/2090 _ZN8Material7datalogERSo [146] ----------------------------------------------- 0.00 0.00 3/510501 _getopt [203] 0.00 0.00 66/510501 yyparse [82] 0.00 0.00 418/510501 yylex [65] 0.04 0.00 510014/510501 expand_locale_name [89] [120] 0.0 0.04 0.00 510501 strchr [120] ----------------------------------------------- 0.00 0.00 2/11596 main [2] 0.00 0.00 4/11596 _getcwd [16] 0.00 0.00 14/11596 _ZN13PeptideString11replaceGeneEiiPS_ [178] 0.00 0.00 132/11596 yyparse [82] 0.00 0.00 207/11596 tzcpy [41] 0.01 0.00 2345/11596 _ZNK13PeptideString9subStringEii [161] 0.03 0.00 8892/11596 yylex [65] [121] 0.0 0.04 0.00 11596 strncpy [121] ----------------------------------------------- 0.01 0.00 55533/206785 __binary_to_decimal_integer [101] 0.03 0.00 151252/206785 __double_to_digits [87] [122] 0.0 0.04 0.00 206785 __four_digits_quick [122] ----------------------------------------------- 0.02 0.02 43169/43169 strtod [113] [123] 0.0 0.02 0.02 43169 _string_to_decimal [123] 0.01 0.01 43169/43169 localeconv [140] ----------------------------------------------- 0.01 0.03 55533/55533 __binary_to_decimal_integer [101] [124] 0.0 0.01 0.03 55533 __big_binary_to_big_decimal [124] 0.01 0.02 55533/186760 __quorem10000 [97] ----------------------------------------------- 0.02 0.01 2330/2330 _ZN4GeneC1EP13PeptideStringiiii [74] [125] 0.0 0.02 0.01 2330 _ZN8MaterialC2EPK13PeptideString [125] 0.01 0.00 98064/7398100 tolower [70] 0.00 0.00 2330/42783706 _ZN6VectorIfEC2Eif [8] ----------------------------------------------- 0.03 0.00 591125/591125 _ZN13PeptideString5matchEPS_i [77] [126] 0.0 0.03 0.00 591125 isupper [126] ----------------------------------------------- [127] 0.0 0.03 0.00 memchr [127] ----------------------------------------------- 0.00 0.00 108/283037 _Z5parsePcRSo [23] 0.00 0.00 8831/283037 _ZN8Organism3dieEv [90] 0.03 0.00 274098/283037 _ZN8Organism4liveEv [4] [128] 0.0 0.03 0.00 283037 _ZN8BaseList7prependEPv [128] ----------------------------------------------- 0.03 0.00 214058/214058 _double_to_decimal [71] [129] 0.0 0.03 0.00 214058 __class_double [129] ----------------------------------------------- 164255 _malloc_unlocked [10] [130] 0.0 0.03 0.00 164255 _smalloc [130] 1170 _malloc_unlocked [10] ----------------------------------------------- 0.00 0.00 2/109696 _getextmntent [44] 0.00 0.00 39/109696 yy_init_buffer [181] 0.03 0.00 109655/109696 _fwrite_unlocked [13] [131] 0.0 0.03 0.00 109696 _fileno [131] ----------------------------------------------- 0.00 0.00 35/109466 _Z41__static_initialization_and_destruction_0ii [184] 0.00 0.00 884/109466 _ZN8OrganismD1Ev [171] 0.01 0.00 18603/109466 _ZN8Location14biomassSummaryEi [81] 0.02 0.00 89944/109466 _ZN8Location9decomposeEv [45] [132] 0.0 0.03 0.00 109466 _ZN6VectorIfED2Ev [132] ----------------------------------------------- 0.00 0.03 55533/55533 __unpack_double_two [111] [133] 0.0 0.00 0.03 55533 _split_double_3 [133] 0.03 0.00 55533/55533 _split_shorten [134] ----------------------------------------------- 0.03 0.00 55533/55533 _split_double_3 [133] [134] 0.0 0.03 0.00 55533 _split_shorten [134] ----------------------------------------------- 0.03 0.00 1838/1838 _ZN8Organism7datalogERSo [119] [135] 0.0 0.03 0.00 1838 _ZN8Organism8dltraitsERSo [135] ----------------------------------------------- 0.00 0.00 1/4184 _Z8epiloguePc [43] 0.00 0.00 1/4184 _ZN10ChromosomeC1EPc [162] 0.00 0.00 1/4184 _Z41__static_initialization_and_destruction_0ii [187] 0.00 0.00 1/4184 getdevinfo [31] 0.00 0.00 2/4184 _strdup [50] 0.00 0.00 3/4184 _ltzset_u [27] 0.00 0.00 3/4184 _tzload [37] 0.00 0.00 6/4184 _getcwd [16] 0.00 0.00 9/4184 _hasmntopt [175] 0.00 0.00 15/4184 _ZN13PeptideString11prependGeneEPS_ [174] 0.00 0.00 66/4184 _Z5parsePcRSo [23] 0.00 0.00 108/4184 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.01 0.00 1638/4184 _ZN10ChromosomeC1ERS_d [66] 0.02 0.00 2330/4184 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [76] [136] 0.0 0.03 0.00 4184 strcpy [136] ----------------------------------------------- [137] 0.0 0.02 0.01 135397+22705 [137] 0.02 0.00 80726 _ZN8Position5moveEEii [139] 0.00 0.00 77376 _ZN8Position5moveNEii [166] ----------------------------------------------- 0.00 0.00 1/1001 _Z8epiloguePc [43] 0.00 0.02 1000/1001 main [2] [138] 0.0 0.00 0.03 1001 _ZN8Location8WorldPopEv [138] 0.03 0.00 36036/72000 _ZN8BaseList6lengthEv [118] ----------------------------------------------- 11056 _ZN8Position5moveNEii [166] 0.01 0.00 69670/135397 _ZN8Organism4liveEv [4] [139] 0.0 0.02 0.00 80726 _ZN8Position5moveEEii [139] 0.00 0.00 13480/349624 .rem [102] 11649 _ZN8Position5moveNEii [166] ----------------------------------------------- 0.01 0.01 43169/43169 _string_to_decimal [123] [140] 0.0 0.01 0.01 43169 localeconv [140] 0.01 0.00 43169/43169 __localeconv_std [155] ----------------------------------------------- [141] 0.0 0.02 0.00 L77008 [141] ----------------------------------------------- 0.00 0.00 43169/257227 strtod [113] 0.02 0.00 214058/257227 _econvert [68] [142] 0.0 0.02 0.00 257227 _QgetRD [142] ----------------------------------------------- 0.02 0.00 186692/186692 __k_double_to_decimal [72] [143] 0.0 0.02 0.00 186692 __arint_set_n [143] ----------------------------------------------- 0.00 0.00 36101/167260 __inrange_double [165] 0.02 0.00 131159/167260 __k_double_to_decimal [72] [144] 0.0 0.02 0.00 167260 __get_ieee_flags [144] ----------------------------------------------- 0.00 0.00 1027/68383 _decimal_to_double [148] 0.02 0.00 67356/68383 _double_to_decimal [71] [145] 0.0 0.02 0.00 68383 __base_conversion_set_exception [145] ----------------------------------------------- 0.00 0.00 252/2090 _Z7datalogi [110] 0.02 0.00 1838/2090 _ZN8Organism7datalogERSo [119] [146] 0.0 0.02 0.00 2090 _ZN8Material7datalogERSo [146] ----------------------------------------------- 0.00 0.00 6/109699 calloc [38] 0.00 0.00 38/109699 fread [60] 0.02 0.00 109655/109699 _fwrite_unlocked [13] [147] 0.0 0.02 0.00 109699 .udiv [147] ----------------------------------------------- 0.01 0.00 43169/43169 strtod [113] [148] 0.0 0.01 0.00 43169 _decimal_to_double [148] 0.00 0.00 36101/36101 __inrange_double [165] 0.00 0.00 1027/68383 __base_conversion_set_exception [145] ----------------------------------------------- 0.01 0.00 865/865 _malloc_unlocked [10] [149] 0.0 0.01 0.00 865 _morecore [149] 0.00 0.00 1730/1730 _sbrk [169] ----------------------------------------------- [150] 0.0 0.01 0.00 L77004 [150] ----------------------------------------------- [151] 0.0 0.01 0.00 LY2 [151] ----------------------------------------------- 0.01 0.00 510222/510222 thr_main [116] [152] 0.0 0.01 0.00 510222 _return_negone [152] ----------------------------------------------- 0.00 0.00 6/55565 calloc [38] 0.00 0.00 26/55565 getiop [189] 0.01 0.00 55533/55565 __binary_to_decimal_fraction [159] [153] 0.0 0.01 0.00 55565 _memset [153] ----------------------------------------------- 0.01 0.00 55533/55533 __unpack_double_two [111] [154] 0.0 0.01 0.00 55533 __right_shift_base_two [154] ----------------------------------------------- 0.01 0.00 43169/43169 localeconv [140] [155] 0.0 0.01 0.00 43169 __localeconv_std [155] ----------------------------------------------- 0.01 0.00 5255/5255 _ZN8Organism3dieEv [90] [156] 0.0 0.01 0.00 5255 _ZN7ProteinD1Ev [156] ----------------------------------------------- 0.01 0.00 252/252 _Z7datalogi [110] [157] 0.0 0.01 0.00 252 _ZN5EnVar7datalogERSo [157] ----------------------------------------------- 0.00 0.00 8/2605 fgets [59] 0.00 0.00 12/2605 _doprnt [49] 0.00 0.00 24/2605 _wrtchk [14] 0.00 0.00 267/2605 __filbuf [57] 0.01 0.00 2294/2605 _xflsbuf [108] [158] 0.0 0.01 0.00 2605 _realbufend [158] ----------------------------------------------- 0.00 0.01 55533/55533 _unpacked_to_decimal_two [83] [159] 0.0 0.00 0.01 55533 __binary_to_decimal_fraction [159] 0.01 0.00 55533/55565 _memset [153] ----------------------------------------------- 0.00 0.01 20025/20025 __double_to_digits [87] [160] 0.0 0.00 0.01 20025 __longquorem10000 [160] 0.01 0.00 40050/5652624 .umul [62] ----------------------------------------------- 0.00 0.00 15/2345 _ZN10ChromosomeC1ERS_d [66] 0.00 0.01 2330/2345 _ZN4GeneC1EP13PeptideStringiiii [74] [161] 0.0 0.00 0.01 2345 _ZNK13PeptideString9subStringEii [161] 0.01 0.00 2345/11596 strncpy [121] ----------------------------------------------- 0.00 0.01 1/1 _Z5parsePcRSo [23] [162] 0.0 0.00 0.01 1 _ZN10ChromosomeC1EPc [162] 0.00 0.00 31/2330 _ZN4GeneC1EP13PeptideStringiiii [74] 0.00 0.00 1/1 _ZN8MaterialC2EPKc [172] 0.00 0.00 1/4184 strcpy [136] 0.00 0.00 1/218573 strlen [86] 0.00 0.00 31/31 _ZN13PeptideString8nextGeneEPPc [523] 0.00 0.00 1/1 _ZNK13PeptideString9geneCountEv [592] ----------------------------------------------- 0.00 0.01 3348/3348 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] [163] 0.0 0.00 0.01 3348 _ZN4GeneC1ERS_i [163] 0.01 0.00 3348/13300626 _ZN6VectorIfEC2ERKS0_ [18] ----------------------------------------------- 0.00 0.00 2763/2763 _ZN13PeptideString10mutateOnceER8mutret_t [100] [164] 0.0 0.00 0.00 2763 _ZN3Urn4drawEv [164] 0.00 0.00 2763/1341501 _ZN6z1_Rnd4Gen1Ev [53] ----------------------------------------------- 0.00 0.00 36101/36101 _decimal_to_double [148] [165] 0.0 0.00 0.00 36101 __inrange_double [165] 0.00 0.00 36101/167260 __get_ieee_flags [144] 0.00 0.00 36101/36101 __digits_to_double [504] 0.00 0.00 36101/167260 __set_ieee_flags [502] ----------------------------------------------- 11649 _ZN8Position5moveEEii [139] 0.01 0.00 65727/135397 _ZN8Organism4liveEv [4] [166] 0.0 0.00 0.00 77376 _ZN8Position5moveNEii [166] 0.00 0.00 13000/349624 .rem [102] 11056 _ZN8Position5moveEEii [139] ----------------------------------------------- 0.00 0.00 1078/1078 _ZN8Location14biomassSummaryEi [81] [167] 0.0 0.00 0.00 1078 _ZNK8MaterialplERKS_ [167] 0.00 0.00 1078/63036 _ZN8MaterialC1Ef [88] ----------------------------------------------- 0.00 0.00 1/2 _Z8epiloguePc [43] 0.00 0.00 1/2 main [2] [168] 0.0 0.00 0.00 2 _ZN8Location15resourceSummaryEi [168] 0.00 0.00 120/13300626 _ZN6VectorIfEC2ERKS0_ [18] 0.00 0.00 122/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 2/36698 _ZN8Material14totalDecomposeEv [52] ----------------------------------------------- 0.00 0.00 1730/1730 _morecore [149] [169] 0.0 0.00 0.00 1730 _sbrk [169] 0.00 0.00 1730/113629963 mutex_lock [29] 0.00 0.00 1730/113629963 mutex_unlock [30] 0.00 0.00 1730/1730 _sbrk_unlocked [509] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [23] [170] 0.0 0.00 0.00 1 _ZN13ReactionTable10initializeEPfPd [170] 0.00 0.00 1470/5652624 .umul [62] ----------------------------------------------- 0.00 0.00 442/442 _ZN8Organism3dieEv [90] [171] 0.0 0.00 0.00 442 _ZN8OrganismD1Ev [171] 0.00 0.00 884/109466 _ZN6VectorIfED2Ev [132] 0.00 0.00 884/884 _ZN13PeptideStringD2Ev [511] ----------------------------------------------- 0.00 0.00 1/1 _ZN10ChromosomeC1EPc [162] [172] 0.0 0.00 0.00 1 _ZN8MaterialC2EPKc [172] 0.00 0.00 1548/7398100 tolower [70] 0.00 0.00 1/42783706 _ZN6VectorIfEC2Eif [8] 0.00 0.00 1/218573 strlen [86] ----------------------------------------------- 0.00 0.00 11/11 yyparse [82] [173] 0.0 0.00 0.00 11 printf [173] 0.00 0.00 11/255019 _doprnt [49] 0.00 0.00 11/255030 _ferror_unlocked [501] 0.00 0.00 1/28 _setorientation [525] ----------------------------------------------- 0.00 0.00 15/15 _ZN10ChromosomeC1ERS_d [66] [174] 0.0 0.00 0.00 15 _ZN13PeptideString11prependGeneEPS_ [174] 0.00 0.00 15/4184 strcpy [136] 0.00 0.00 15/127 strcat [211] ----------------------------------------------- 0.00 0.00 9/9 getdevinfo [31] [175] 0.0 0.00 0.00 9 _hasmntopt [175] 0.00 0.00 9/4184 strcpy [136] 0.00 0.00 35/218573 strlen [86] 0.00 0.00 44/44 mntopt [217] 0.00 0.00 35/39 strncmp [218] ----------------------------------------------- 0.00 0.00 71/71 _Z5parsePcRSo [23] [176] 0.0 0.00 0.00 71 _ZN8MaterialC2Ef [176] 0.00 0.00 71/42783706 _ZN6VectorIfEC2Eif [8] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [23] [177] 0.0 0.00 0.00 1 _ZN8Material16partialDecomposeEd [177] 0.00 0.00 1/36698 _ZN8Material14totalDecomposeEv [52] 0.00 0.00 1/13300626 _ZN6VectorIfEC2ERKS0_ [18] ----------------------------------------------- 0.00 0.00 14/14 _ZN10ChromosomeC1ERS_d [66] [178] 0.0 0.00 0.00 14 _ZN13PeptideString11replaceGeneEiiPS_ [178] 0.00 0.00 14/11596 strncpy [121] 0.00 0.00 14/127 strcat [211] ----------------------------------------------- 0.00 0.00 37/37 _Z5parsePcRSo [23] [179] 0.0 0.00 0.00 37 rewind [179] 0.00 0.00 37/37 _rewind_unlocked [180] ----------------------------------------------- 0.00 0.00 37/37 rewind [179] [180] 0.0 0.00 0.00 37 _rewind_unlocked [180] 0.00 0.00 37/85581 _fflush_u [104] 0.00 0.00 37/37 _fileno_unlocked [517] 0.00 0.00 37/101 _lseek64 [513] ----------------------------------------------- [181] 0.0 0.00 0.00 yy_init_buffer [181] 0.00 0.00 39/66 _isatty [183] 0.00 0.00 39/109696 _fileno [131] ----------------------------------------------- 0.00 0.00 1/199 _cerror64 [207] 0.00 0.00 66/199 _cerror [188] 0.00 0.00 132/199 _isatty [183] [182] 0.0 0.00 0.00 199 ___errno [182] 0.00 0.00 199/510222 thr_main [116] ----------------------------------------------- 0.00 0.00 27/66 _findbuf [11] 0.00 0.00 39/66 yy_init_buffer [181] [183] 0.0 0.00 0.00 66 _isatty [183] 0.00 0.00 132/199 ___errno [182] 0.00 0.00 66/66 _cerror [188] 0.00 0.00 66/68 _ioctl [514] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [184] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [184] 0.00 0.00 35/109466 _ZN6VectorIfED2Ev [132] 0.00 0.00 1/1 _ZN13ReactionTableC1Ei [590] ----------------------------------------------- [185] 0.0 0.00 0.00 __do_global_ctors_aux [185] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [184] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [187] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [554] 0.00 0.00 1/1 _GLOBAL__I__ZN8Location4NLocE [583] 0.00 0.00 1/1 _GLOBAL__I_sfn [588] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [556] 0.00 0.00 1/1 _GLOBAL__I_TargetOrganism [575] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [557] 0.00 0.00 1/1 _GLOBAL__I__ZN6Serial12nextSerialNoE [580] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [550] 0.00 0.00 1/1 _GLOBAL__I__ZN10Chromosome6RegLenE [576] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [558] 0.00 0.00 1/1 _GLOBAL__I__ZlsRSoR7Protein [587] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [548] 0.00 0.00 1/1 _GLOBAL__I__ZlsRSoR4Gene [586] 0.00 0.00 1/1 _GLOBAL__I__ZN13PeptideString3NILE [578] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [549] 0.00 0.00 1/1 _GLOBAL__I__ZN6z1_Rnd3RNGE [581] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [551] 0.00 0.00 1/1 _GLOBAL__I__ZN4Date11currentTimeE [579] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [547] 0.00 0.00 1/1 _GLOBAL__I__ZN8Material7findMinEii [584] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [553] 0.00 0.00 1/1 _GLOBAL__I__ZN12Protopeptide13NoFunctionMsgE [577] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [555] 0.00 0.00 1/1 _GLOBAL__I__ZN8BaseList7prependEPv [582] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [552] 0.00 0.00 1/1 _GLOBAL__I__ZN8Position1XE [585] ----------------------------------------------- [186] 0.0 0.00 0.00 __do_global_dtors_aux [186] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [184] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [187] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [552] 0.00 0.00 1/1 _GLOBAL__D__ZN8Position1XE [571] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [555] 0.00 0.00 1/1 _GLOBAL__D__ZN8BaseList7prependEPv [568] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [553] 0.00 0.00 1/1 _GLOBAL__D__ZN12Protopeptide13NoFunctionMsgE [563] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [547] 0.00 0.00 1/1 _GLOBAL__D__ZN8Material7findMinEii [570] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [551] 0.00 0.00 1/1 _GLOBAL__D__ZN4Date11currentTimeE [565] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [549] 0.00 0.00 1/1 _GLOBAL__D__ZN6z1_Rnd3RNGE [567] 0.00 0.00 1/1 _GLOBAL__D__ZN13PeptideString3NILE [564] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [548] 0.00 0.00 1/1 _GLOBAL__D__ZlsRSoR4Gene [572] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [558] 0.00 0.00 1/1 _GLOBAL__D__ZlsRSoR7Protein [573] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [550] 0.00 0.00 1/1 _GLOBAL__D__ZN10Chromosome6RegLenE [562] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [557] 0.00 0.00 1/1 _GLOBAL__D__ZN6Serial12nextSerialNoE [566] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [556] 0.00 0.00 1/1 _GLOBAL__D_TargetOrganism [561] 0.00 0.00 1/1 _GLOBAL__D_sfn [574] 0.00 0.00 1/2 _Z41__static_initialization_and_destruction_0ii [554] 0.00 0.00 1/1 _GLOBAL__D__ZN8Location4NLocE [569] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [187] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [187] 0.00 0.00 1/4184 strcpy [136] 0.00 0.00 1/218573 strlen [86] ----------------------------------------------- 0.00 0.00 66/66 _isatty [183] [188] 0.0 0.00 0.00 66 _cerror [188] 0.00 0.00 66/199 ___errno [182] ----------------------------------------------- 0.00 0.00 102/102 _findiop [191] [189] 0.0 0.00 0.00 102 getiop [189] 0.00 0.00 26/55565 _memset [153] ----------------------------------------------- 0.00 0.00 1/2 _Z5parsePcRSo [23] 0.00 0.00 1/2 getdevinfo [31] [190] 0.0 0.00 0.00 2 fopen [190] 0.00 0.00 26/26 _findiop [191] 0.00 0.00 26/26 _endopen [528] ----------------------------------------------- 0.00 0.00 26/26 fopen [190] [191] 0.0 0.00 0.00 26 _findiop [191] 0.00 0.00 102/102 getiop [189] ----------------------------------------------- 0.00 0.00 2/2 fflush [94] [192] 0.0 0.00 0.00 2 _fflush_u_iops [192] 0.00 0.00 2/85581 _fflush_u [104] ----------------------------------------------- 0.00 0.00 6/6 getsystemTZ [194] [193] 0.0 0.00 0.00 6 getenv [193] 0.00 0.00 6/113629963 mutex_lock [29] 0.00 0.00 6/113629963 mutex_unlock [30] 0.00 0.00 120/120 nvmatch [212] ----------------------------------------------- 0.00 0.00 6/6 _ltzset_u [27] [194] 0.0 0.00 0.00 6 getsystemTZ [194] 0.00 0.00 6/6 getenv [193] ----------------------------------------------- 0.00 0.00 1/3 internal_mcount [3] 0.00 0.00 2/3 _start [1] [195] 0.0 0.00 0.00 3 atexit [195] 0.00 0.00 3/3 get_mem [198] 0.00 0.00 3/113629963 mutex_lock [29] 0.00 0.00 3/113629963 mutex_unlock [30] ----------------------------------------------- 0.00 0.00 1/1 _start [1] [196] 0.0 0.00 0.00 1 exit [196] 0.00 0.00 1/1 _exithandle [197] ----------------------------------------------- 0.00 0.00 1/1 exit [196] [197] 0.0 0.00 0.00 1 _exithandle [197] 0.00 0.00 4/113629963 mutex_lock [29] 0.00 0.00 2/2 free_mem [199] 0.00 0.00 4/113629963 mutex_unlock [30] ----------------------------------------------- 0.00 0.00 3/3 atexit [195] [198] 0.0 0.00 0.00 3 get_mem [198] 0.00 0.00 3/113629963 mutex_lock [29] 0.00 0.00 3/113629963 mutex_unlock [30] 0.00 0.00 1/1 mem_init [227] ----------------------------------------------- 0.00 0.00 2/2 _exithandle [197] [199] 0.0 0.00 0.00 2 free_mem [199] 0.00 0.00 2/113629963 mutex_lock [29] 0.00 0.00 2/113629963 mutex_unlock [30] ----------------------------------------------- [200] 0.0 0.00 0.00 frame_dummy [200] 0.00 0.00 1/1 _pthread_mutex_unlock [202] ----------------------------------------------- [201] 0.0 0.00 0.00 pthread_mutex_lock [201] 0.00 0.00 7/227259943 _return_zero [34] ----------------------------------------------- 0.00 0.00 1/1 frame_dummy [200] [202] 0.0 0.00 0.00 1 _pthread_mutex_unlock [202] 0.00 0.00 7/227259943 _return_zero [34] ----------------------------------------------- 0.00 0.00 4/4 main [2] [203] 0.0 0.00 0.00 4 _getopt [203] 0.00 0.00 3/510501 strchr [120] 0.00 0.00 3/50 strcmp [215] ----------------------------------------------- 0.00 0.00 1/1 _init [206] [204] 0.0 0.00 0.00 1 check_nlspath_env [204] 0.00 0.00 1/113629963 mutex_lock [29] 0.00 0.00 1/113629963 mutex_unlock [30] 0.00 0.00 1/1 _geteuid [595] 0.00 0.00 1/1 _getuid [598] 0.00 0.00 1/1 _getegid [594] 0.00 0.00 1/1 _getgid [596] ----------------------------------------------- 0.00 0.00 1/1 getdevinfo [31] [205] 0.0 0.00 0.00 1 _resetmnttab [205] 0.00 0.00 1/113629963 mutex_lock [29] 0.00 0.00 1/113629963 mutex_unlock [30] ----------------------------------------------- [206] 0.0 0.00 0.00 _init [206] 0.00 0.00 1/1 check_nlspath_env [204] 0.00 0.00 1/1 _atexit_init [593] ----------------------------------------------- 0.00 0.00 1/1 _fflush_u [104] [207] 0.0 0.00 0.00 1 _cerror64 [207] 0.00 0.00 1/199 ___errno [182] ----------------------------------------------- [208] 0.0 0.00 0.00 _pthread_once [208] 0.00 0.00 1/227259943 _return_zero [34] ----------------------------------------------- 0.00 0.00 3/19835 __posix_asctime_r [543] 0.00 0.00 36/19835 ct_numb [220] 0.00 0.00 60/19835 offtime_u [223] 0.00 0.00 19736/19835 _doprnt [49] [209] 0.0 0.00 0.00 19835 .mul [209] ----------------------------------------------- 0.00 0.00 146/146 _tzload [37] [210] 0.0 0.00 0.00 146 detzcode [210] ----------------------------------------------- 0.00 0.00 1/127 getdevinfo [31] 0.00 0.00 6/127 _tzload [37] 0.00 0.00 14/127 _ZN13PeptideString11replaceGeneEiiPS_ [178] 0.00 0.00 15/127 _ZN13PeptideString11prependGeneEPS_ [174] 0.00 0.00 91/127 yyparse [82] [211] 0.0 0.00 0.00 127 strcat [211] ----------------------------------------------- 0.00 0.00 120/120 getenv [193] [212] 0.0 0.00 0.00 120 nvmatch [212] ----------------------------------------------- 0.00 0.00 1/67 main [2] 0.00 0.00 66/67 yyparse [82] [213] 0.0 0.00 0.00 67 atoi [213] ----------------------------------------------- 0.00 0.00 54/54 _strtok_r [515] [214] 0.0 0.00 0.00 54 strspn [214] ----------------------------------------------- 0.00 0.00 2/50 _tzload [37] 0.00 0.00 3/50 _getopt [203] 0.00 0.00 45/50 _getextmntent [44] [215] 0.0 0.00 0.00 50 strcmp [215] ----------------------------------------------- 0.00 0.00 45/45 _strtok_r [515] [216] 0.0 0.00 0.00 45 strpbrk [216] ----------------------------------------------- 0.00 0.00 44/44 _hasmntopt [175] [217] 0.0 0.00 0.00 44 mntopt [217] ----------------------------------------------- 0.00 0.00 4/39 _getcwd [16] 0.00 0.00 35/39 _hasmntopt [175] [218] 0.0 0.00 0.00 39 strncmp [218] ----------------------------------------------- 0.00 0.00 36/36 getzname [107] [219] 0.0 0.00 0.00 36 goodTZchar [219] ----------------------------------------------- 0.00 0.00 18/18 __posix_asctime_r [543] [220] 0.0 0.00 0.00 18 ct_numb [220] 0.00 0.00 36/19835 .mul [209] ----------------------------------------------- 0.00 0.00 9/9 getdevinfo [31] [221] 0.0 0.00 0.00 9 isdevice [221] 0.00 0.00 9/9 __makedev [531] ----------------------------------------------- 0.00 0.00 7/7 _getcwd [16] [222] 0.0 0.00 0.00 7 prepend [222] ----------------------------------------------- 0.00 0.00 6/6 localtime_u [26] [223] 0.0 0.00 0.00 6 offtime_u [223] 0.00 0.00 60/19835 .mul [209] ----------------------------------------------- 0.00 0.00 3/3 ctime [24] [224] 0.0 0.00 0.00 3 asctime [224] 0.00 0.00 3/3 _asctime_r [544] ----------------------------------------------- 0.00 0.00 3/3 gettime [226] [225] 0.0 0.00 0.00 3 getdigit [225] ----------------------------------------------- 0.00 0.00 3/3 _ltzset_u [27] [226] 0.0 0.00 0.00 3 gettime [226] 0.00 0.00 3/3 getdigit [225] ----------------------------------------------- 0.00 0.00 1/1 get_mem [198] [227] 0.0 0.00 0.00 1 mem_init [227] ----------------------------------------------- 0.00 0.00 1/1 getdevinfo [31] [228] 0.0 0.00 0.00 1 strrchr [228] ----------------------------------------------- 0.00 0.00 11/255030 printf [173] 0.00 0.00 255019/255030 _doprnt [49] [501] 0.0 0.00 0.00 255030 _ferror_unlocked [501] ----------------------------------------------- 0.00 0.00 36101/167260 __inrange_double [165] 0.00 0.00 131159/167260 __k_double_to_decimal [72] [502] 0.0 0.00 0.00 167260 __set_ieee_flags [502] ----------------------------------------------- 0.00 0.00 55533/55533 _unpacked_to_decimal_two [83] [503] 0.0 0.00 0.00 55533 __decimal_round [503] ----------------------------------------------- 0.00 0.00 36101/36101 __inrange_double [165] [504] 0.0 0.00 0.00 36101 __digits_to_double [504] ----------------------------------------------- 0.00 0.00 108/20888 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.00 0.00 765/20888 _ZN8OrganismC1ERS_P10Chromosome [73] 0.00 0.00 20015/20888 _ZN8Organism4liveEv [4] [505] 0.0 0.00 0.00 20888 _ZN10Chromosome14nextGeneOffsetEi [505] ----------------------------------------------- 0.00 0.00 18064/18064 _ZN8Location14biomassSummaryEi [81] [506] 0.0 0.00 0.00 18064 _ZN8MaterialpLERKS_ [506] ----------------------------------------------- 0.00 0.00 8711/8711 _ZN8Location9decomposeEv [45] [507] 0.0 0.00 0.00 8711 _ZN4ListIP7ProteinE4findES1_ [507] ----------------------------------------------- 0.00 0.00 2330/2330 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [76] [508] 0.0 0.00 0.00 2330 _ZN13PeptideString8skipGeneEPci [508] ----------------------------------------------- 0.00 0.00 1730/1730 _sbrk [169] [509] 0.0 0.00 0.00 1730 _sbrk_unlocked [509] ----------------------------------------------- 0.00 0.00 999/999 main [2] [510] 0.0 0.00 0.00 999 _ZN9Literator5resetEv [510] ----------------------------------------------- 0.00 0.00 884/884 _ZN8OrganismD1Ev [171] [511] 0.0 0.00 0.00 884 _ZN13PeptideStringD2Ev [511] ----------------------------------------------- 0.00 0.00 1/269 _tzload [37] 0.00 0.00 268/269 __filbuf [57] [512] 0.0 0.00 0.00 269 _read [512] ----------------------------------------------- 0.00 0.00 23/101 _endopen [528] 0.00 0.00 37/101 _rewind_unlocked [180] 0.00 0.00 41/101 _fflush_u [104] [513] 0.0 0.00 0.00 101 _lseek64 [513] ----------------------------------------------- 0.00 0.00 2/68 _getextmntent [44] 0.00 0.00 66/68 _isatty [183] [514] 0.0 0.00 0.00 68 _ioctl [514] ----------------------------------------------- 0.00 0.00 54/54 _getextmntent [44] [515] 0.0 0.00 0.00 54 _strtok_r [515] 0.00 0.00 54/54 strspn [214] 0.00 0.00 45/45 strpbrk [216] ----------------------------------------------- 0.00 0.00 39/39 _getcwd [16] [516] 0.0 0.00 0.00 39 _readdir64 [516] 0.00 0.00 3/3 _getdents64 [545] ----------------------------------------------- 0.00 0.00 37/37 _rewind_unlocked [180] [517] 0.0 0.00 0.00 37 _fileno_unlocked [517] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [23] [518] 0.0 0.00 0.00 36 _ZN5EnVar11setDefaultsEPd [518] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [23] [519] 0.0 0.00 0.00 36 _ZN5EnVarC1ERKS_ [519] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [23] [520] 0.0 0.00 0.00 36 _ZN6VectorIfEaSERKS0_ [520] ----------------------------------------------- 0.00 0.00 4/35 _getcwd [16] 0.00 0.00 4/35 _opendir [42] 0.00 0.00 27/35 _findbuf [11] [521] 0.0 0.00 0.00 35 _fstat64 [521] ----------------------------------------------- 0.00 0.00 1/32 _tzload [37] 0.00 0.00 4/32 _closedir [46] 0.00 0.00 27/32 fclose [19] [522] 0.0 0.00 0.00 32 _close [522] ----------------------------------------------- 0.00 0.00 31/31 _ZN10ChromosomeC1EPc [162] [523] 0.0 0.00 0.00 31 _ZN13PeptideString8nextGeneEPPc [523] ----------------------------------------------- 0.00 0.00 28/28 _findbuf [11] [524] 0.0 0.00 0.00 28 _setbufend [524] ----------------------------------------------- 0.00 0.00 1/28 printf [173] 0.00 0.00 1/28 fread [60] 0.00 0.00 1/28 fgets [59] 0.00 0.00 25/28 fwrite [12] [525] 0.0 0.00 0.00 28 _setorientation [525] ----------------------------------------------- 0.00 0.00 27/27 _libc_open [527] [526] 0.0 0.00 0.00 27 __open [526] ----------------------------------------------- 0.00 0.00 1/27 _tzload [37] 0.00 0.00 26/27 _endopen [528] [527] 0.0 0.00 0.00 27 _libc_open [527] 0.00 0.00 27/27 __open [526] ----------------------------------------------- 0.00 0.00 26/26 fopen [190] [528] 0.0 0.00 0.00 26 _endopen [528] 0.00 0.00 26/27 _libc_open [527] 0.00 0.00 23/101 _lseek64 [513] ----------------------------------------------- 0.00 0.00 24/24 _ZN13PeptideString10mutateOnceER8mutret_t [100] [529] 0.0 0.00 0.00 24 _ZN13PeptideString10insertCharEic [529] ----------------------------------------------- 0.00 0.00 10/10 fgets [59] [530] 0.0 0.00 0.00 10 _memccpy [530] ----------------------------------------------- 0.00 0.00 9/9 isdevice [221] [531] 0.0 0.00 0.00 9 __makedev [531] ----------------------------------------------- 0.00 0.00 1/8 _Z8epiloguePc [43] 0.00 0.00 7/8 _Z7datalogi [110] [532] 0.0 0.00 0.00 8 _ZlsRSoRK4Date [532] ----------------------------------------------- 0.00 0.00 1/7 main [2] 0.00 0.00 2/7 _Z8epiloguePc [43] 0.00 0.00 4/7 _Z5parsePcRSo [23] [533] 0.0 0.00 0.00 7 _ZlsRSoRK8Material [533] ----------------------------------------------- 0.00 0.00 5/5 _libc_sigaction [535] [534] 0.0 0.00 0.00 5 __sigaction [534] ----------------------------------------------- 0.00 0.00 5/5 _sigaction [536] [535] 0.0 0.00 0.00 5 _libc_sigaction [535] 0.00 0.00 5/5 __sigaction [534] ----------------------------------------------- 0.00 0.00 5/5 _signal [538] [536] 0.0 0.00 0.00 5 _sigaction [536] 0.00 0.00 5/5 _libc_sigaction [535] ----------------------------------------------- 0.00 0.00 5/5 _signal [538] [537] 0.0 0.00 0.00 5 _sigemptyset [537] ----------------------------------------------- 0.00 0.00 5/5 main [2] [538] 0.0 0.00 0.00 5 _signal [538] 0.00 0.00 5/5 _sigemptyset [537] 0.00 0.00 5/5 _sigaction [536] ----------------------------------------------- 0.00 0.00 4/4 _libc_fcntl [541] [539] 0.0 0.00 0.00 4 __fcntl [539] ----------------------------------------------- 0.00 0.00 4/4 _libc_open64 [542] [540] 0.0 0.00 0.00 4 __open64 [540] ----------------------------------------------- 0.00 0.00 4/4 _opendir [42] [541] 0.0 0.00 0.00 4 _libc_fcntl [541] 0.00 0.00 4/4 __fcntl [539] ----------------------------------------------- 0.00 0.00 4/4 _opendir [42] [542] 0.0 0.00 0.00 4 _libc_open64 [542] 0.00 0.00 4/4 __open64 [540] ----------------------------------------------- 0.00 0.00 3/3 _asctime_r [544] [543] 0.0 0.00 0.00 3 __posix_asctime_r [543] 0.00 0.00 18/18 ct_numb [220] 0.00 0.00 3/19835 .mul [209] ----------------------------------------------- 0.00 0.00 3/3 asctime [224] [544] 0.0 0.00 0.00 3 _asctime_r [544] 0.00 0.00 3/3 __posix_asctime_r [543] ----------------------------------------------- 0.00 0.00 3/3 _readdir64 [516] [545] 0.0 0.00 0.00 3 _getdents64 [545] ----------------------------------------------- 0.00 0.00 1/3 _Z8epiloguePc [43] 0.00 0.00 1/3 main [2] 0.00 0.00 1/3 _Z41__static_initialization_and_destruction_0ii [549] [546] 0.0 0.00 0.00 3 _time [546] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [547] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [547] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [548] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [548] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [549] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [549] 0.00 0.00 1/3 _time [546] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [550] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [550] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [551] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [551] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [552] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [552] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [553] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [553] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [554] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [554] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [555] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [555] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [556] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [556] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [557] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [557] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [186] 0.00 0.00 1/2 __do_global_ctors_aux [185] [558] 0.0 0.00 0.00 2 _Z41__static_initialization_and_destruction_0ii [558] ----------------------------------------------- 0.00 0.00 2/2 getdevinfo [31] [559] 0.0 0.00 0.00 2 _lstat64 [559] ----------------------------------------------- 0.00 0.00 2/2 _getcwd [16] [560] 0.0 0.00 0.00 2 _stat64 [560] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [561] 0.0 0.00 0.00 1 _GLOBAL__D_TargetOrganism [561] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [562] 0.0 0.00 0.00 1 _GLOBAL__D__ZN10Chromosome6RegLenE [562] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [563] 0.0 0.00 0.00 1 _GLOBAL__D__ZN12Protopeptide13NoFunctionMsgE [563] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [564] 0.0 0.00 0.00 1 _GLOBAL__D__ZN13PeptideString3NILE [564] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [565] 0.0 0.00 0.00 1 _GLOBAL__D__ZN4Date11currentTimeE [565] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [566] 0.0 0.00 0.00 1 _GLOBAL__D__ZN6Serial12nextSerialNoE [566] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [567] 0.0 0.00 0.00 1 _GLOBAL__D__ZN6z1_Rnd3RNGE [567] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [568] 0.0 0.00 0.00 1 _GLOBAL__D__ZN8BaseList7prependEPv [568] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [569] 0.0 0.00 0.00 1 _GLOBAL__D__ZN8Location4NLocE [569] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [570] 0.0 0.00 0.00 1 _GLOBAL__D__ZN8Material7findMinEii [570] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [571] 0.0 0.00 0.00 1 _GLOBAL__D__ZN8Position1XE [571] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [572] 0.0 0.00 0.00 1 _GLOBAL__D__ZlsRSoR4Gene [572] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [573] 0.0 0.00 0.00 1 _GLOBAL__D__ZlsRSoR7Protein [573] ----------------------------------------------- 0.00 0.00 1/1 __do_global_dtors_aux [186] [574] 0.0 0.00 0.00 1 _GLOBAL__D_sfn [574] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [575] 0.0 0.00 0.00 1 _GLOBAL__I_TargetOrganism [575] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [576] 0.0 0.00 0.00 1 _GLOBAL__I__ZN10Chromosome6RegLenE [576] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [577] 0.0 0.00 0.00 1 _GLOBAL__I__ZN12Protopeptide13NoFunctionMsgE [577] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [578] 0.0 0.00 0.00 1 _GLOBAL__I__ZN13PeptideString3NILE [578] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [579] 0.0 0.00 0.00 1 _GLOBAL__I__ZN4Date11currentTimeE [579] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [580] 0.0 0.00 0.00 1 _GLOBAL__I__ZN6Serial12nextSerialNoE [580] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [581] 0.0 0.00 0.00 1 _GLOBAL__I__ZN6z1_Rnd3RNGE [581] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [582] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8BaseList7prependEPv [582] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [583] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Location4NLocE [583] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [584] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Material7findMinEii [584] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [585] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Position1XE [585] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [586] 0.0 0.00 0.00 1 _GLOBAL__I__ZlsRSoR4Gene [586] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [587] 0.0 0.00 0.00 1 _GLOBAL__I__ZlsRSoR7Protein [587] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [185] [588] 0.0 0.00 0.00 1 _GLOBAL__I_sfn [588] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [23] [589] 0.0 0.00 0.00 1 _ZN13PeptideString4initEi [589] ----------------------------------------------- 0.00 0.00 1/1 _Z41__static_initialization_and_destruction_0ii [184] [590] 0.0 0.00 0.00 1 _ZN13ReactionTableC1Ei [590] ----------------------------------------------- 0.00 0.00 1/1 main [2] [591] 0.0 0.00 0.00 1 _ZN9LiteratorC1Ev [591] ----------------------------------------------- 0.00 0.00 1/1 _ZN10ChromosomeC1EPc [162] [592] 0.0 0.00 0.00 1 _ZNK13PeptideString9geneCountEv [592] ----------------------------------------------- 0.00 0.00 1/1 _init [206] [593] 0.0 0.00 0.00 1 _atexit_init [593] ----------------------------------------------- 0.00 0.00 1/1 check_nlspath_env [204] [594] 0.0 0.00 0.00 1 _getegid [594] ----------------------------------------------- 0.00 0.00 1/1 check_nlspath_env [204] [595] 0.0 0.00 0.00 1 _geteuid [595] ----------------------------------------------- 0.00 0.00 1/1 check_nlspath_env [204] [596] 0.0 0.00 0.00 1 _getgid [596] ----------------------------------------------- 0.00 0.00 1/1 main [2] [597] 0.0 0.00 0.00 1 _getpid [597] ----------------------------------------------- 0.00 0.00 1/1 check_nlspath_env [204] [598] 0.0 0.00 0.00 1 _getuid [598] ----------------------------------------------- 0.00 0.00 1/1 main [2] [599] 0.0 0.00 0.00 1 _lstat [599] ----------------------------------------------- 0.00 0.00 1/1 _getcwd [16] [600] 0.0 0.00 0.00 1 _pathconf [600] ----------------------------------------------- 0.00 0.00 1/1 moncontrol [331] [601] 0.0 0.00 0.00 1 _profil [601] ----------------------------------------------- 0.00 0.00 1/1 _sysconf [1128] [602] 0.0 0.00 0.00 1 _sysconfig [602] ----------------------------------------------- 0.00 0.00 1/1 main [2] [603] 0.0 0.00 0.00 1 _uname [603] ----------------------------------------------- /* * Copyright (c) 1998 by Sun Microsystems, Inc. * All rights reserved. */ #pragma ident "@(#)gprof.flat.blurb 1.9 98/04/09 SMI" flat profile: % the percentage of the total running time of the time program used by this function. cumulative a running sum of the number of seconds accounted seconds for by this function and those listed above it. self the number of seconds accounted for by this seconds function alone. This is the major sort for this listing. calls the number of times this function was invoked, if this function is profiled, else blank. self the average number of milliseconds spent in this ms/call function per call, if this function is profiled, else blank. total the average number of milliseconds spent in this ms/call function and its descendents per call, if this function is profiled, else blank. name the name of the function. This is the minor sort for this listing. The index shows the location of the function in the gprof listing. If the index is in parenthesis it shows where it would appear in the gprof listing if it were to be printed. Index by function names and Object modules listing: The index entries are mapped to the function names. If the same function name appears in multiple object modules, each of these names is prefixed with a module identifier followed by a colon. The shared object modules listing that follows maps these identifiers to appropriate objects. granularity: each sample hit covers 4 byte(s) for 0.00% of 930.26 seconds % cumulative self self total time seconds seconds calls ms/call ms/call name 43.9 407.92 407.92 internal_mcount [3] 16.6 562.03 154.11 7872789 0.02 0.04 _ZN8Reaction5reactEdR8Material [5] 7.4 631.11 69.08 374347 0.18 1.08 _ZN8Organism4liveEv [4] 6.9 695.63 64.52 21511360 0.00 0.00 _ZN8Reaction12equilibriumPER8Material [6] 5.6 747.44 51.81 42783706 0.00 0.00 _ZN6VectorIfEC2Eif [8] 2.1 767.44 20.00 13300626 0.00 0.00 _ZN6VectorIfEC2ERKS0_ [18] 2.0 785.85 18.41 73244983 0.00 0.00 __pow [17] 1.6 800.68 14.83 _mcount (992) 1.6 815.27 14.59 56607483 0.00 0.00 _malloc_unlocked [10] 1.3 827.36 12.09 52162259 0.00 0.00 __floor [28] 1.1 838.04 10.68 47220460 0.00 0.00 realfree [21] 1.0 847.26 9.22 227259943 0.00 0.00 _return_zero [34] 0.9 855.39 8.13 56511876 0.00 0.00 _free_unlocked [36] 0.8 862.51 7.12 113629963 0.00 0.00 mutex_lock [29] 0.7 869.31 6.80 113629963 0.00 0.00 mutex_unlock [30] 0.7 876.10 6.79 46 147.61 1280.83 malloc [7] 0.7 882.78 6.68 286448 0.02 0.02 _ZN8Organism21calculateEfficienciesEv [39] 0.7 889.26 6.48 27944394 0.00 0.00 t_splay [40] 0.6 894.51 5.25 27121676 0.00 0.00 cleanfree [22] 0.5 899.40 4.89 970447 0.01 0.02 _ZN8Material16exchangeMaterialES_ [20] 0.5 904.25 4.85 32 151.56 765.55 free [15] 0.4 907.82 3.57 32374507 0.00 0.00 t_delete [32] 0.3 910.68 2.86 111949 0.03 0.03 _write [48] 0.2 912.92 2.24 36698 0.06 0.07 _ZN8Material14totalDecomposeEv [52] 0.2 914.70 1.78 2664318 0.00 0.00 log2_x [54] 0.2 916.23 1.53 9357317 0.00 0.00 _ZN12Protopeptide6effectEiR5EnVarR8Material [55] 0.2 917.71 1.48 285575 0.01 0.03 _ZN8Organism20calculateUptakeRatesEv [35] 0.1 919.07 1.36 6101003 0.00 0.00 __ceil [56] 0.1 920.29 1.22 5652624 0.00 0.00 .umul [62] 0.1 921.29 1.00 1343554 0.00 0.00 .div [63] 0.1 922.25 0.96 929161 0.00 0.00 _ZN10Chromosome9findCodonEi [64] 0.1 923.04 0.79 999 0.79 9.23 _ZN8Location11updateShareEv [33] 0.1 923.82 0.78 yylex [65] 0.1 924.51 0.69 7398100 0.00 0.00 tolower [70] 0.1 925.16 0.65 998 0.65 3.56 _ZN8Location9decomposeEv [45] 0.1 925.75 0.59 255019 0.00 0.01 _doprnt [49] 0.0 926.15 0.40 1341501 0.00 0.00 _ZN6z1_Rnd4Gen1Ev [53] 0.0 926.49 0.34 510014 0.00 0.00 _real_setlocale [69] 0.0 926.74 0.25 412401 0.00 0.00 _ZN13BiotaIterator7getNextEv [78] 0.0 926.93 0.19 yyparse [82] 0.0 927.08 0.15 218573 0.00 0.00 strlen [86] 0.0 927.22 0.14 131159 0.00 0.00 __k_double_to_decimal [72] 0.0 927.35 0.13 153780 0.00 0.00 _ZN13PeptideString5matchEPS_i [77] 0.0 927.47 0.12 510014 0.00 0.00 load_all_locales [79] 0.0 927.59 0.12 214058 0.00 0.00 _econvert [68] 0.0 927.71 0.12 1638 0.07 0.22 _ZN8MaterialC1EPKc [75] 0.0 927.82 0.11 259359 0.00 0.00 _memcpy [92] 0.0 927.92 0.10 547550 0.00 0.00 _ZN4ListIP8OrganismE4findES1_ [98] 0.0 928.02 0.10 981 0.10 0.25 _ZN8MaterialC1EPK13PeptideString [80] 0.0 928.11 0.09 510014 0.00 0.00 expand_locale_name [89] 0.0 928.20 0.09 349624 0.00 0.00 .rem [102] 0.0 928.29 0.09 _brk_unlocked [103] 0.0 928.37 0.08 2763 0.03 0.03 _ZN13PeptideString10mutateOnceER8mutret_t [100] 0.0 928.45 0.08 1 80.00 2892.14 sprintf [47] 0.0 928.53 0.08 _setlocale [67] 0.0 928.59 0.06 71928 0.00 0.00 __log [114] 0.0 928.65 0.06 63036 0.00 0.00 _ZN8MaterialC1Ef [88] 0.0 928.71 0.06 35964 0.00 0.00 _ZN8Location9updateEnvEv [85] 0.0 928.77 0.06 16986 0.00 0.01 _ZNK8MaterialmlEf [99] 0.0 928.82 0.05 282486 0.00 0.00 _ZN8BaseList6removeEPv [117] 0.0 928.87 0.05 111948 0.00 0.30 _fwrite_unlocked [13] 0.0 928.92 0.05 72000 0.00 0.00 _ZN8BaseList6lengthEv [118] 0.0 928.97 0.05 71928 0.00 0.00 _ZN8Location17calculateModifierEi [93] 0.0 929.02 0.05 fwrite [12] 0.0 929.06 0.04 510501 0.00 0.00 strchr [120] 0.0 929.10 0.04 510222 0.00 0.00 thr_main [116] 0.0 929.14 0.04 206785 0.00 0.00 __four_digits_quick [122] 0.0 929.18 0.04 55533 0.00 0.00 __binary_to_decimal_integer [101] 0.0 929.22 0.04 55533 0.00 0.00 _unpacked_to_decimal_two [83] 0.0 929.26 0.04 11596 0.00 0.00 strncpy [121] 0.0 929.29 0.03 591125 0.00 0.00 isupper [126] 0.0 929.32 0.03 283037 0.00 0.00 _ZN8BaseList7prependEPv [128] 0.0 929.35 0.03 273775 0.00 0.00 _ZN8Location11removeBiotaEP8Organism [84] 0.0 929.38 0.03 214058 0.00 0.00 __class_double [129] 0.0 929.41 0.03 164255 0.00 0.00 _smalloc [130] 0.0 929.44 0.03 109696 0.00 0.00 _fileno [131] 0.0 929.47 0.03 109466 0.00 0.00 _ZN6VectorIfED2Ev [132] 0.0 929.50 0.03 80628 0.00 0.00 _ZN8Position5moveSEii [109] 0.0 929.53 0.03 75626 0.00 0.00 __double_to_digits [87] 0.0 929.56 0.03 55533 0.00 0.00 __unpack_double_two [111] 0.0 929.59 0.03 55533 0.00 0.00 _split_shorten [134] 0.0 929.62 0.03 4184 0.01 0.01 strcpy [136] 0.0 929.65 0.03 2330 0.01 0.14 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [76] 0.0 929.68 0.03 1838 0.02 0.02 _ZN8Organism8dltraitsERSo [135] 0.0 929.71 0.03 1 30.00 467709.98 main [2] 0.0 929.74 0.03 memchr [127] 0.0 929.76 0.02 257227 0.00 0.00 _QgetRD [142] 0.0 929.78 0.02 214058 0.00 0.00 _double_to_decimal [71] 0.0 929.80 0.02 186760 0.00 0.00 __quorem10000 [97] 0.0 929.82 0.02 186692 0.00 0.00 __arint_set_n [143] 0.0 929.84 0.02 167260 0.00 0.00 __get_ieee_flags [144] 0.0 929.86 0.02 109699 0.00 0.00 .udiv [147] 0.0 929.88 0.02 80726 0.00 0.00 _ZN8Position5moveEEii [139] 0.0 929.90 0.02 68383 0.00 0.00 __base_conversion_set_exception [145] 0.0 929.92 0.02 43169 0.00 0.00 _string_to_decimal [123] 0.0 929.94 0.02 36963 0.00 0.00 _ZN9Literator6getOneEv [105] 0.0 929.96 0.02 2330 0.01 0.01 _ZN8MaterialC2EPK13PeptideString [125] 0.0 929.98 0.02 2090 0.01 0.01 _ZN8Material7datalogERSo [146] 0.0 930.00 0.02 1638 0.01 0.53 _ZN10ChromosomeC1ERS_d [66] 0.0 930.02 0.02 2 10.00 53.67 fflush [94] 0.0 930.04 0.02 L77008 [141] 0.0 930.05 0.01 510222 0.00 0.00 _return_negone [152] 0.0 930.06 0.01 85581 0.00 0.00 _fflush_u [104] 0.0 930.07 0.01 80441 0.00 0.00 _ZN8Position5moveWEii [115] 0.0 930.08 0.01 55565 0.00 0.00 _memset [153] 0.0 930.09 0.01 55533 0.00 0.00 __big_binary_to_big_decimal [124] 0.0 930.10 0.01 55533 0.00 0.00 __right_shift_base_two [154] 0.0 930.11 0.01 43169 0.00 0.00 __localeconv_std [155] 0.0 930.12 0.01 43169 0.00 0.00 _decimal_to_double [148] 0.0 930.13 0.01 43169 0.00 0.00 atof [106] 0.0 930.14 0.01 43169 0.00 0.00 localeconv [140] 0.0 930.15 0.01 43169 0.00 0.00 strtod [113] 0.0 930.16 0.01 5255 0.00 0.00 _ZN7ProteinD1Ev [156] 0.0 930.17 0.01 2605 0.00 0.00 _realbufend [158] 0.0 930.18 0.01 2330 0.00 0.16 _ZN4GeneC1EP13PeptideStringiiii [74] 0.0 930.19 0.01 2294 0.00 0.03 _xflsbuf [108] 0.0 930.20 0.01 865 0.01 0.01 _morecore [149] 0.0 930.21 0.01 765 0.01 0.60 _ZN8OrganismC1ERS_P10Chromosome [73] 0.0 930.22 0.01 268 0.04 4.65 __filbuf [57] 0.0 930.23 0.01 252 0.04 0.04 _ZN5EnVar7datalogERSo [157] 0.0 930.24 0.01 7 1.43 10.18 _Z7datalogi [110] 0.0 930.25 0.01 L77004 [150] 0.0 930.26 0.01 LY2 [151] 0.0 930.26 0.00 255030 0.00 0.00 _ferror_unlocked [501] 0.0 930.26 0.00 167260 0.00 0.00 __set_ieee_flags [502] 0.0 930.26 0.00 77376 0.00 0.00 _ZN8Position5moveNEii [166] 0.0 930.26 0.00 55533 0.00 0.00 __binary_to_decimal_fraction [159] 0.0 930.26 0.00 55533 0.00 0.00 __decimal_round [503] 0.0 930.26 0.00 55533 0.00 0.00 _split_double_3 [133] 0.0 930.26 0.00 36101 0.00 0.00 __digits_to_double [504] 0.0 930.26 0.00 36101 0.00 0.00 __inrange_double [165] 0.0 930.26 0.00 20888 0.00 0.00 _ZN10Chromosome14nextGeneOffsetEi [505] 0.0 930.26 0.00 20025 0.00 0.00 __longquorem10000 [160] 0.0 930.26 0.00 19835 0.00 0.00 .mul [209] 0.0 930.26 0.00 18064 0.00 0.00 _ZN8MaterialpLERKS_ [506] 0.0 930.26 0.00 8711 0.00 0.00 _ZN4ListIP7ProteinE4findES1_ [507] 0.0 930.26 0.00 3348 0.00 0.00 _ZN4GeneC1ERS_i [163] 0.0 930.26 0.00 2763 0.00 0.00 _ZN3Urn4drawEv [164] 0.0 930.26 0.00 2345 0.00 0.00 _ZNK13PeptideString9subStringEii [161] 0.0 930.26 0.00 2330 0.00 0.00 _ZN13PeptideString8skipGeneEPci [508] 0.0 930.26 0.00 1838 0.00 0.03 _ZN8Organism7datalogERSo [119] 0.0 930.26 0.00 1730 0.00 0.00 _sbrk [169] 0.0 930.26 0.00 1730 0.00 0.00 _sbrk_unlocked [509] 0.0 930.26 0.00 1078 0.00 0.00 _ZNK8MaterialplERKS_ [167] 0.0 930.26 0.00 1001 0.00 0.02 _ZN8Location8WorldPopEv [138] 0.0 930.26 0.00 999 0.00 0.00 _ZN9Literator5resetEv [510] 0.0 930.26 0.00 884 0.00 0.00 _ZN13PeptideStringD2Ev [511] 0.0 930.26 0.00 442 0.00 0.29 _ZN8Organism3dieEv [90] 0.0 930.26 0.00 442 0.00 0.00 _ZN8OrganismD1Ev [171] 0.0 930.26 0.00 269 0.00 0.00 _read [512] 0.0 930.26 0.00 266 0.00 4.65 fread [60] 0.0 930.26 0.00 207 0.00 25.96 tzcpy [41] 0.0 930.26 0.00 199 0.00 0.00 ___errno [182] 0.0 930.26 0.00 146 0.00 0.00 detzcode [210] 0.0 930.26 0.00 127 0.00 0.00 strcat [211] 0.0 930.26 0.00 120 0.00 0.00 nvmatch [212] 0.0 930.26 0.00 108 0.00 0.64 _ZN8OrganismC1ER10ChromosomeR8Materialiic [112] 0.0 930.26 0.00 102 0.00 0.00 getiop [189] 0.0 930.26 0.00 101 0.00 0.00 _lseek64 [513] 0.0 930.26 0.00 71 0.00 0.00 _ZN8MaterialC2Ef [176] 0.0 930.26 0.00 68 0.00 0.00 _ioctl [514] 0.0 930.26 0.00 67 0.00 0.00 atoi [213] 0.0 930.26 0.00 66 0.00 0.00 _cerror [188] 0.0 930.26 0.00 66 0.00 0.00 _isatty [183] 0.0 930.26 0.00 54 0.00 0.00 _strtok_r [515] 0.0 930.26 0.00 54 0.00 0.00 strspn [214] 0.0 930.26 0.00 50 0.00 0.00 strcmp [215] 0.0 930.26 0.00 45 0.00 0.00 strpbrk [216] 0.0 930.26 0.00 44 0.00 0.00 mntopt [217] 0.0 930.26 0.00 39 0.00 0.00 _readdir64 [516] 0.0 930.26 0.00 39 0.00 0.00 strncmp [218] 0.0 930.26 0.00 37 0.00 0.00 _fileno_unlocked [517] 0.0 930.26 0.00 37 0.00 0.00 _rewind_unlocked [180] 0.0 930.26 0.00 37 0.00 0.00 rewind [179] 0.0 930.26 0.00 36 0.00 0.00 _ZN5EnVar11setDefaultsEPd [518] 0.0 930.26 0.00 36 0.00 0.00 _ZN5EnVarC1ERKS_ [519] 0.0 930.26 0.00 36 0.00 0.00 _ZN6VectorIfEaSERKS0_ [520] 0.0 930.26 0.00 36 0.00 0.00 goodTZchar [219] 0.0 930.26 0.00 35 0.00 0.00 _fstat64 [521] 0.0 930.26 0.00 32 0.00 0.00 _close [522] 0.0 930.26 0.00 31 0.00 0.00 _ZN13PeptideString8nextGeneEPPc [523] 0.0 930.26 0.00 28 0.00 1235.09 _findbuf [11] 0.0 930.26 0.00 28 0.00 0.00 _setbufend [524] 0.0 930.26 0.00 28 0.00 0.00 _setorientation [525] 0.0 930.26 0.00 27 0.00 0.00 __open [526] 0.0 930.26 0.00 27 0.00 0.00 _libc_open [527] 0.0 930.26 0.00 26 0.00 0.00 _endopen [528] 0.0 930.26 0.00 26 0.00 0.00 _findiop [191] 0.0 930.26 0.00 25 0.00 1235.09 _wrtchk [14] 0.0 930.26 0.00 24 0.00 0.00 _ZN13PeptideString10insertCharEic [529] 0.0 930.26 0.00 18 0.00 0.00 ct_numb [220] 0.0 930.26 0.00 15 0.00 0.01 _ZN13PeptideString11prependGeneEPS_ [174] 0.0 930.26 0.00 14 0.00 0.00 _ZN13PeptideString11replaceGeneEiiPS_ [178] 0.0 930.26 0.00 11 0.00 0.01 printf [173] 0.0 930.26 0.00 10 0.00 0.00 _memccpy [530] 0.0 930.26 0.00 9 0.00 0.00 __makedev [531] 0.0 930.26 0.00 9 0.00 422.90 _getextmntent [44] 0.0 930.26 0.00 9 0.00 0.01 _hasmntopt [175] 0.0 930.26 0.00 9 0.00 138.27 fgets [59] 0.0 930.26 0.00 9 0.00 138.27 getline [58] 0.0 930.26 0.00 9 0.00 0.00 isdevice [221] 0.0 930.26 0.00 8 0.00 0.00 _ZlsRSoRK4Date [532] 0.0 930.26 0.00 7 0.00 0.00 _ZlsRSoRK8Material [533] 0.0 930.26 0.00 7 0.00 0.00 prepend [222] 0.0 930.26 0.00 6 0.00 1280.84 calloc [38] 0.0 930.26 0.00 6 0.00 0.00 getenv [193] 0.0 930.26 0.00 6 0.00 0.00 getsystemTZ [194] 0.0 930.26 0.00 6 0.00 0.00 offtime_u [223] 0.0 930.26 0.00 5 0.00 0.00 __sigaction [534] 0.0 930.26 0.00 5 0.00 0.00 _libc_sigaction [535] 0.0 930.26 0.00 5 0.00 0.00 _sigaction [536] 0.0 930.26 0.00 5 0.00 0.00 _sigemptyset [537] 0.0 930.26 0.00 5 0.00 0.00 _signal [538] 0.0 930.26 0.00 4 0.00 0.00 __fcntl [539] 0.0 930.26 0.00 4 0.00 0.00 __open64 [540] 0.0 930.26 0.00 4 0.00 765.55 _closedir [46] 0.0 930.26 0.00 4 0.00 0.00 _getopt [203] 0.0 930.26 0.00 4 0.00 0.00 _libc_fcntl [541] 0.0 930.26 0.00 4 0.00 0.00 _libc_open64 [542] 0.0 930.26 0.00 4 0.00 1280.83 _opendir [42] 0.0 930.26 0.00 3 0.00 0.00 __posix_asctime_r [543] 0.0 930.26 0.00 3 0.00 0.00 _asctime_r [544] 0.0 930.26 0.00 3 0.00 0.00 _getdents64 [545] 0.0 930.26 0.00 3 0.00 4353.23 _ltzset_u [27] 0.0 930.26 0.00 3 0.00 0.00 _time [546] 0.0 930.26 0.00 3 0.00 2561.68 _tzload [37] 0.0 930.26 0.00 3 0.00 0.00 asctime [224] 0.0 930.26 0.00 3 0.00 0.00 atexit [195] 0.0 930.26 0.00 3 0.00 4353.23 ctime [24] 0.0 930.26 0.00 3 0.00 6634.81 fclose [19] 0.0 930.26 0.00 3 0.00 0.00 get_mem [198] 0.0 930.26 0.00 3 0.00 0.00 getdigit [225] 0.0 930.26 0.00 3 0.00 0.00 gettime [226] 0.0 930.26 0.00 3 0.00 25.96 getzname [107] 0.0 930.26 0.00 3 0.00 4353.23 localtime [25] 0.0 930.26 0.00 3 0.00 4353.23 localtime_u [26] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [184] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [547] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [550] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [553] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [552] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [549] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [555] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [558] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [556] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [557] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [554] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [548] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [551] 0.0 930.26 0.00 2 0.00 0.00 _Z41__static_initialization_and_destruction_0ii [187] 0.0 930.26 0.00 2 0.00 119.16 _ZN8Location14biomassSummaryEi [81] 0.0 930.26 0.00 2 0.00 0.23 _ZN8Location15resourceSummaryEi [168] 0.0 930.26 0.00 2 0.00 0.00 _fflush_u_iops [192] 0.0 930.26 0.00 2 0.00 0.00 _lstat64 [559] 0.0 930.26 0.00 2 0.00 0.00 _stat64 [560] 0.0 930.26 0.00 2 0.00 1280.84 _strdup [50] 0.0 930.26 0.00 2 0.00 0.00 fopen [190] 0.0 930.26 0.00 2 0.00 0.00 free_mem [199] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D_TargetOrganism [561] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN10Chromosome6RegLenE [562] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN12Protopeptide13NoFunctionMsgE [563] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN13PeptideString3NILE [564] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN4Date11currentTimeE [565] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN6Serial12nextSerialNoE [566] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN6z1_Rnd3RNGE [567] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN8BaseList7prependEPv [568] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN8Location4NLocE [569] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN8Material7findMinEii [570] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZN8Position1XE [571] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZlsRSoR4Gene [572] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D__ZlsRSoR7Protein [573] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__D_sfn [574] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I_TargetOrganism [575] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN10Chromosome6RegLenE [576] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN12Protopeptide13NoFunctionMsgE [577] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN13PeptideString3NILE [578] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN4Date11currentTimeE [579] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN6Serial12nextSerialNoE [580] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN6z1_Rnd3RNGE [581] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN8BaseList7prependEPv [582] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Location4NLocE [583] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Material7findMinEii [584] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Position1XE [585] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZlsRSoR4Gene [586] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I__ZlsRSoR7Protein [587] 0.0 930.26 0.00 1 0.00 0.00 _GLOBAL__I_sfn [588] 0.0 930.26 0.00 1 0.00 13345.52 _Z5parsePcRSo [23] 0.0 930.26 0.00 1 0.00 4472.65 _Z8epiloguePc [43] 0.0 930.26 0.00 1 0.00 5.16 _ZN10ChromosomeC1EPc [162] 0.0 930.26 0.00 1 0.00 0.00 _ZN13PeptideString4initEi [589] 0.0 930.26 0.00 1 0.00 0.32 _ZN13ReactionTable10initializeEPfPd [170] 0.0 930.26 0.00 1 0.00 0.00 _ZN13ReactionTableC1Ei [590] 0.0 930.26 0.00 1 0.00 0.07 _ZN8Material16partialDecomposeEd [177] 0.0 930.26 0.00 1 0.00 0.15 _ZN8MaterialC2EPKc [172] 0.0 930.26 0.00 1 0.00 0.00 _ZN9LiteratorC1Ev [591] 0.0 930.26 0.00 1 0.00 0.00 _ZNK13PeptideString9geneCountEv [592] 0.0 930.26 0.00 1 0.00 0.00 _atexit_init [593] 0.0 930.26 0.00 1 0.00 0.00 _cerror64 [207] 0.0 930.26 0.00 1 0.00 107.35 _cleanup [95] 0.0 930.26 0.00 1 0.00 0.00 _exithandle [197] 0.0 930.26 0.00 1 0.00 21188.30 _getcwd [16] 0.0 930.26 0.00 1 0.00 0.00 _getegid [594] 0.0 930.26 0.00 1 0.00 0.00 _geteuid [595] 0.0 930.26 0.00 1 0.00 0.00 _getgid [596] 0.0 930.26 0.00 1 0.00 0.00 _getpid [597] 0.0 930.26 0.00 1 0.00 0.00 _getuid [598] 0.0 930.26 0.00 1 0.00 0.00 _lstat [599] 0.0 930.26 0.00 1 0.00 0.00 _pathconf [600] 0.0 930.26 0.00 1 0.00 0.00 _profil [601] 0.0 930.26 0.00 1 0.00 0.00 _pthread_mutex_unlock [202] 0.0 930.26 0.00 1 0.00 0.00 _resetmnttab [205] 0.0 930.26 0.00 1 0.00 0.00 _sysconfig [602] 0.0 930.26 0.00 1 0.00 0.00 _uname [603] 0.0 930.26 0.00 1 0.00 0.00 check_nlspath_env [204] 0.0 930.26 0.00 1 0.00 0.00 exit [196] 0.0 930.26 0.00 1 0.00 10441.01 getdevinfo [31] 0.0 930.26 0.00 1 0.00 0.00 mem_init [227] 0.0 930.26 0.00 1 0.00 0.00 strrchr [228] Index by function name [63] .div [506] _ZN8MaterialpLERKS_ [600] _pathconf [209] .mul [35] _ZN8Organism20calcu [601] _profil [102] .rem [39] _ZN8Organism21calcu [202] _pthread_mutex_unlo [147] .udiv [90] _ZN8Organism3dieEv [512] _read [62] .umul [4] _ZN8Organism4liveEv [516] _readdir64 [150] L77004 [119] _ZN8Organism7datalo [69] _real_setlocale [141] L77008 [135] _ZN8Organism8dltrai [158] _realbufend [151] LY2 [112] _ZN8OrganismC1ER10C [205] _resetmnttab [561] _GLOBAL__D_TargetOr [73] _ZN8OrganismC1ERS_P [152] _return_negone [562] _GLOBAL__D__ZN10Chr [171] _ZN8OrganismD1Ev [34] _return_zero [563] _GLOBAL__D__ZN12Pro [139] _ZN8Position5moveEE [180] _rewind_unlocked [564] _GLOBAL__D__ZN13Pep [166] _ZN8Position5moveNE [169] _sbrk [565] _GLOBAL__D__ZN4Date [109] _ZN8Position5moveSE [509] _sbrk_unlocked [566] _GLOBAL__D__ZN6Seri [115] _ZN8Position5moveWE [524] _setbufend [567] _GLOBAL__D__ZN6z1_R [6] _ZN8Reaction12equil [67] _setlocale [568] _GLOBAL__D__ZN8Base [5] _ZN8Reaction5reactE [525] _setorientation [569] _GLOBAL__D__ZN8Loca [510] _ZN9Literator5reset [536] _sigaction [570] _GLOBAL__D__ZN8Mate [105] _ZN9Literator6getOn [537] _sigemptyset [571] _GLOBAL__D__ZN8Posi [591] _ZN9LiteratorC1Ev [538] _signal [572] _GLOBAL__D__ZlsRSoR [592] _ZNK13PeptideString [130] _smalloc [573] _GLOBAL__D__ZlsRSoR [161] _ZNK13PeptideString [133] _split_double_3 [574] _GLOBAL__D_sfn [99] _ZNK8MaterialmlEf [134] _split_shorten [575] _GLOBAL__I_TargetOr [167] _ZNK8MaterialplERKS [560] _stat64 [576] _GLOBAL__I__ZN10Chr [532] _ZlsRSoRK4Date [50] _strdup [577] _GLOBAL__I__ZN12Pro [533] _ZlsRSoRK8Material [123] _string_to_decimal [578] _GLOBAL__I__ZN13Pep [182] ___errno [515] _strtok_r [579] _GLOBAL__I__ZN4Date [143] __arint_set_n [602] _sysconfig [580] _GLOBAL__I__ZN6Seri [145] __base_conversion_s [546] _time [581] _GLOBAL__I__ZN6z1_R [124] __big_binary_to_big [37] _tzload [582] _GLOBAL__I__ZN8Base [159] __binary_to_decimal [603] _uname [583] _GLOBAL__I__ZN8Loca [101] __binary_to_decimal [83] _unpacked_to_decima [584] _GLOBAL__I__ZN8Mate [56] __ceil [48] _write [585] _GLOBAL__I__ZN8Posi [129] __class_double [14] _wrtchk [586] _GLOBAL__I__ZlsRSoR [503] __decimal_round [108] _xflsbuf [587] _GLOBAL__I__ZlsRSoR [504] __digits_to_double [224] asctime [588] _GLOBAL__I_sfn [87] __double_to_digits [195] atexit [142] _QgetRD [539] __fcntl [106] atof [557] 1:_Z41__static_init [57] __filbuf [213] atoi [555] 1:_Z41__static_init [28] __floor [38] calloc [550] 1:_Z41__static_init [122] __four_digits_quick [204] check_nlspath_env [549] 1:_Z41__static_init [144] __get_ieee_flags [22] cleanfree [547] 1:_Z41__static_init [165] __inrange_double [220] ct_numb [552] 1:_Z41__static_init [72] __k_double_to_decim [24] ctime [556] 1:_Z41__static_init [155] __localeconv_std [210] detzcode [558] 1:_Z41__static_init [114] __log [196] exit [551] 1:_Z41__static_init [160] __longquorem10000 [89] expand_locale_name [187] 1:_Z41__static_init [531] __makedev [19] fclose [184] 1:_Z41__static_init [526] __open [94] fflush [554] 1:_Z41__static_init [540] __open64 [59] fgets [548] 1:_Z41__static_init [543] __posix_asctime_r [190] fopen [553] 1:_Z41__static_init [17] __pow [60] fread [23] _Z5parsePcRSo [97] __quorem10000 [15] free [110] _Z7datalogi [154] __right_shift_base_ [199] free_mem [43] _Z8epiloguePc [502] __set_ieee_flags [12] fwrite [505] _ZN10Chromosome14ne [534] __sigaction [198] get_mem [64] _ZN10Chromosome9fin [111] __unpack_double_two [31] getdevinfo [162] _ZN10ChromosomeC1EP [544] _asctime_r [225] getdigit [66] _ZN10ChromosomeC1ER [593] _atexit_init [193] getenv [55] _ZN12Protopeptide6e [103] _brk_unlocked [189] getiop [76] _ZN12Protopeptide6l [188] _cerror [58] getline [78] _ZN13BiotaIterator7 [207] _cerror64 [194] getsystemTZ [529] _ZN13PeptideString1 [95] _cleanup [226] gettime [100] _ZN13PeptideString1 [522] _close [107] getzname [174] _ZN13PeptideString1 [46] _closedir [219] goodTZchar [178] _ZN13PeptideString1 [148] _decimal_to_double [3] internal_mcount [589] _ZN13PeptideString4 [49] _doprnt [221] isdevice [77] _ZN13PeptideString5 [71] _double_to_decimal [126] isupper [523] _ZN13PeptideString8 [68] _econvert [79] load_all_locales [508] _ZN13PeptideString8 [528] _endopen [140] localeconv [511] _ZN13PeptideStringD [197] _exithandle [25] localtime [170] _ZN13ReactionTable1 [501] _ferror_unlocked [26] localtime_u [590] _ZN13ReactionTableC [104] _fflush_u [54] log2_x [164] _ZN3Urn4drawEv [192] _fflush_u_iops [2] main [74] _ZN4GeneC1EP13Pepti [131] _fileno [7] malloc [163] _ZN4GeneC1ERS_i [517] _fileno_unlocked [227] mem_init [507] _ZN4ListIP7ProteinE [11] _findbuf [127] memchr [98] _ZN4ListIP8Organism [191] _findiop [217] mntopt [518] _ZN5EnVar11setDefau [36] _free_unlocked [29] mutex_lock [157] _ZN5EnVar7datalogER [521] _fstat64 [30] mutex_unlock [519] _ZN5EnVarC1ERKS_ [13] _fwrite_unlocked [212] nvmatch [18] _ZN6VectorIfEC2ERKS [16] _getcwd [223] offtime_u [8] _ZN6VectorIfEC2Eif [545] _getdents64 [222] prepend [132] _ZN6VectorIfED2Ev [594] _getegid [173] printf [520] _ZN6VectorIfEaSERKS [595] _geteuid [21] realfree [53] _ZN6z1_Rnd4Gen1Ev [44] _getextmntent [179] rewind [156] _ZN7ProteinD1Ev [596] _getgid [47] sprintf [118] _ZN8BaseList6length [203] _getopt [211] strcat [117] _ZN8BaseList6remove [597] _getpid [120] strchr [128] _ZN8BaseList7prepen [598] _getuid [215] strcmp [84] _ZN8Location11remov [175] _hasmntopt [136] strcpy [33] _ZN8Location11updat [514] _ioctl [86] strlen [81] _ZN8Location14bioma [183] _isatty [218] strncmp [168] _ZN8Location15resou [541] _libc_fcntl [121] strncpy [93] _ZN8Location17calcu [527] _libc_open [216] strpbrk [138] _ZN8Location8WorldP [542] _libc_open64 [228] strrchr [45] _ZN8Location9decomp [535] _libc_sigaction [214] strspn [85] _ZN8Location9update [513] _lseek64 [113] strtod [52] _ZN8Material14total [599] _lstat [32] t_delete [20] _ZN8Material16excha [559] _lstat64 [40] t_splay [177] _ZN8Material16parti [27] _ltzset_u [116] thr_main [146] _ZN8Material7datalo [10] _malloc_unlocked [70] tolower [80] _ZN8MaterialC1EPK13 (992) _mcount [41] tzcpy [75] _ZN8MaterialC1EPKc [530] _memccpy [65] yylex [88] _ZN8MaterialC1Ef [92] _memcpy [82] yyparse [125] _ZN8MaterialC2EPK13 [153] _memset [9] [172] _ZN8MaterialC2EPKc [149] _morecore [91] [176] _ZN8MaterialC2Ef [42] _opendir [137] Object modules 1: evolve