Flat profile: Each sample counts as 0.01 seconds. % cumulative self self total time seconds seconds calls us/call us/call name 51.45 126.05 126.05 7609126 16.57 25.43 Reaction::react(double, Material &) 27.54 193.52 67.47 20561649 3.28 3.28 Reaction::equilibriumP(Material &) 16.65 234.31 40.79 362445 112.54 649.17 Organism::live(void) 2.29 239.91 5.60 278418 20.11 20.11 Organism::calculateEfficiencies(void) 0.50 241.14 1.23 36670 33.54 33.54 Material::totalDecompose(void) 0.45 242.25 1.11 277573 4.00 24.11 Organism::calculateUptakeRates(void) 0.27 242.92 0.67 998 671.34 1922.38 Location::decompose(void) 0.24 243.50 0.58 1301093 0.45 0.45 z1_Rnd::Gen1(void) 0.08 243.69 0.19 999 190.19 7089.51 Location::updateShare(void) 0.07 243.86 0.17 yylex 0.07 244.02 0.16 72000 2.22 2.22 BaseList::length(void) 0.05 244.15 0.13 710414 0.18 0.18 BiotaIterator::getNext(void) 0.04 244.26 0.11 2 55000.00 62335.79 Location::biomassSummary(int) 0.04 244.36 0.10 1583 63.17 63.17 Material::Material(char const *) 0.04 244.45 0.09 147709 0.61 0.61 PeptideString::match(PeptideString *, int) 0.04 244.54 0.09 3191 28.20 28.20 Material::Material(PeptideString const *) 0.03 244.62 0.08 110852 0.72 1.17 Literator::getOne(void) 0.03 244.70 0.08 main 0.02 244.75 0.05 2666 18.75 18.75 Urn::reset(void) 0.02 244.79 0.04 264387 0.15 0.19 Location::removeBiota(Organism *) 0.02 244.83 0.04 1796 22.27 22.27 Organism::dltraits(ostream &) 0.02 244.87 0.04 yyparse 0.01 244.90 0.03 71928 0.42 0.42 Location::calculateModifier(int) 0.01 244.92 0.02 273467 0.07 0.07 BaseList::prepend(void *) 0.01 244.94 0.02 1796 11.14 33.41 Organism::datalog(ostream &) 0.01 244.96 0.02 434 46.08 75.94 Organism::die(void) 0.00 244.97 0.01 272998 0.04 0.04 BaseList::remove(void *) 0.00 244.98 0.01 35964 0.28 1.11 Location::updateEnv(void) 0.00 244.99 0.01 1582 6.32 200.19 Chromosome::Chromosome(Chromosome &, double) 0.00 245.00 0.01 108 92.59 337.01 Organism::Organism(Chromosome &, Material &, int, int, char) 0.00 245.01 0.01 1 10000.00 48654.95 parse(char *, ostream &) 0.00 245.01 0.00 11296 0.00 0.00 Position::moveW(int, int) 0.00 245.01 0.00 10662 0.00 0.00 Position::moveE(int, int) 0.00 245.01 0.00 2769 0.00 0.45 PeptideString::rChar(void) 0.00 245.01 0.00 2666 0.00 20.12 PeptideString::mutateOnce(mutret_t &) 0.00 245.01 0.00 2258 0.00 0.00 PeptideString::subString(int, int) const 0.00 245.01 0.00 2239 0.00 68.39 Gene::Gene(PeptideString *, int, int, int, int) 0.00 245.01 0.00 2238 0.00 40.21 Protopeptide::lookup(PeptideString *, short *, int *) 0.00 245.01 0.00 2238 0.00 0.00 PeptideString::skipGene(char *, int) 0.00 245.01 0.00 2048 0.00 0.00 Material::datalog(ostream &) 0.00 245.01 0.00 1998 0.00 0.00 Literator::Literator(void) 0.00 245.01 0.00 1001 0.00 80.00 Location::WorldPop(void) 0.00 245.01 0.00 999 0.00 0.00 Literator::reset(void) 0.00 245.01 0.00 434 0.00 0.00 Organism::~Organism(void) 0.00 245.01 0.00 252 0.00 0.00 EnVar::datalog(ostream &) 0.00 245.01 0.00 36 0.00 0.00 Location::operator=(Location const &) 0.00 245.01 0.00 36 0.00 0.00 EnVar::setDefaults(double *) 0.00 245.01 0.00 31 0.00 0.00 PeptideString::nextGene(char **) 0.00 245.01 0.00 20 0.00 0.00 PeptideString::prependGene(PeptideString *) 0.00 245.01 0.00 8 0.00 0.00 operator<<(ostream &, Date const &) 0.00 245.01 0.00 8 0.00 0.00 PeptideString::replaceGene(int, int, PeptideString *) 0.00 245.01 0.00 7 0.00 0.00 operator<<(ostream &, Material const &) 0.00 245.01 0.00 7 0.00 8624.97 datalog(int) 0.00 245.01 0.00 2 0.00 0.00 HandleINT 0.00 245.01 0.00 2 0.00 0.00 __static_initialization_and_destruction_0 0.00 245.01 0.00 2 0.00 33.54 Location::resourceSummary(int) 0.00 245.01 0.00 1 0.00 0.00 z1_Rnd::~z1_Rnd(void) 0.00 245.01 0.00 1 0.00 2183.20 Chromosome::Chromosome(char *) 0.00 245.01 0.00 1 0.00 0.00 __static_initialization_and_destruction_0 0.00 245.01 0.00 1 0.00 0.00 __static_initialization_and_destruction_0 0.00 245.01 0.00 1 0.00 62449.34 epilogue(char *) 0.00 245.01 0.00 1 0.00 0.00 PeptideString::geneCount(void) const 0.00 245.01 0.00 1 0.00 0.00 PeptideString::init(int) 0.00 245.01 0.00 1 0.00 0.00 PeptideString::insert(PeptideString *, int) 0.00 245.01 0.00 1 0.00 33.54 Material::partialDecompose(double) 0.00 245.01 0.00 1 0.00 0.00 PeptideString::split(int) % the percentage of the total running time of the time program used by this function. cumulative a running sum of the number of seconds accounted seconds for by this function and those listed above it. self the number of seconds accounted for by this seconds function alone. This is the major sort for this listing. calls the number of times this function was invoked, if this function is profiled, else blank. self the average number of milliseconds spent in this ms/call function per call, if this function is profiled, else blank. total the average number of milliseconds spent in this ms/call function and its descendents per call, if this function is profiled, else blank. name the name of the function. This is the minor sort for this listing. The index shows the location of the function in the gprof listing. If the index is in parenthesis it shows where it would appear in the gprof listing if it were to be printed. Call graph (explanation follows) granularity: each sample hit covers 4 byte(s) for 0.00% of 245.01 seconds index % time self children called name [1] 99.9 0.08 244.72 main [1] 40.79 194.50 362445/362445 Organism::live(void) [2] 0.19 6.89 999/999 Location::updateShare(void) [5] 0.67 1.25 998/998 Location::decompose(void) [8] 0.00 0.08 1000/1001 Location::WorldPop(void) [22] 0.07 0.00 398409/710414 BiotaIterator::getNext(void) [15] 0.00 0.06 1/1 epilogue(char *) [23] 0.06 0.01 1/2 Location::biomassSummary(int) [17] 0.00 0.06 7/7 datalog(int) [24] 0.01 0.04 1/1 parse(char *, ostream &) [29] 0.03 0.02 36963/110852 Literator::getOne(void) [16] 0.00 0.00 1/2 Location::resourceSummary(int) [40] 0.00 0.00 999/999 Literator::reset(void) [48] 0.00 0.00 1/7 operator<<(ostream &, Material const &) [150] 0.00 0.00 1/1998 Literator::Literator(void) [146] ----------------------------------------------- 40.79 194.50 362445/362445 main [1] [2] 96.0 40.79 194.50 362445 Organism::live(void) [2] 126.05 67.47 7609126/7609126 Reaction::react(double, Material &) [3] 0.52 0.00 1177319/1301093 z1_Rnd::Gen1(void) [10] 0.01 0.29 1474/1582 Chromosome::Chromosome(Chromosome &, double) [11] 0.04 0.01 263953/264387 Location::removeBiota(Organism *) [28] 0.02 0.01 434/434 Organism::die(void) [34] 0.02 0.00 737/36670 Material::totalDecompose(void) [9] 0.02 0.00 264690/273467 BaseList::prepend(void *) [36] 0.00 0.01 737/277573 Organism::calculateUptakeRates(void) [6] 0.01 0.00 737/278418 Organism::calculateEfficiencies(void) [7] 0.00 0.00 11296/11296 Position::moveW(int, int) [43] 0.00 0.00 10662/10662 Position::moveE(int, int) [44] ----------------------------------------------- 126.05 67.47 7609126/7609126 Organism::live(void) [2] [3] 79.0 126.05 67.47 7609126 Reaction::react(double, Material &) [3] 67.47 0.00 20561649/20561649 Reaction::equilibriumP(Material &) [4] ----------------------------------------------- 67.47 0.00 20561649/20561649 Reaction::react(double, Material &) [3] [4] 27.5 67.47 0.00 20561649 Reaction::equilibriumP(Material &) [4] ----------------------------------------------- 0.19 6.89 999/999 main [1] [5] 2.9 0.19 6.89 999 Location::updateShare(void) [5] 1.11 5.57 276728/277573 Organism::calculateUptakeRates(void) [6] 0.08 0.00 35964/72000 BaseList::length(void) [13] 0.06 0.00 309957/710414 BiotaIterator::getNext(void) [15] 0.03 0.02 36963/110852 Literator::getOne(void) [16] 0.01 0.03 35964/35964 Location::updateEnv(void) [30] 0.00 0.00 999/1998 Literator::Literator(void) [146] ----------------------------------------------- 0.00 0.00 108/277573 Organism::Organism(Chromosome &, Material &, int, int, char) [33] 0.00 0.01 737/277573 Organism::live(void) [2] 1.11 5.57 276728/277573 Location::updateShare(void) [5] [6] 2.7 1.11 5.58 277573 Organism::calculateUptakeRates(void) [6] 5.58 0.00 277573/278418 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- 0.00 0.00 108/278418 Organism::Organism(Chromosome &, Material &, int, int, char) [33] 0.01 0.00 737/278418 Organism::live(void) [2] 5.58 0.00 277573/278418 Organism::calculateUptakeRates(void) [6] [7] 2.3 5.60 0.00 278418 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- 0.67 1.25 998/998 main [1] [8] 0.8 0.67 1.25 998 Location::decompose(void) [8] 1.21 0.00 35928/36670 Material::totalDecompose(void) [9] 0.03 0.02 36926/110852 Literator::getOne(void) [16] 0.00 0.00 8611/272998 BaseList::remove(void *) [37] 0.00 0.00 998/1998 Literator::Literator(void) [146] ----------------------------------------------- 0.00 0.00 1/36670 Location::biomassSummary(int) [17] 0.00 0.00 1/36670 parse(char *, ostream &) [29] 0.00 0.00 1/36670 Material::partialDecompose(double) [41] 0.00 0.00 2/36670 Location::resourceSummary(int) [40] 0.02 0.00 737/36670 Organism::live(void) [2] 1.21 0.00 35928/36670 Location::decompose(void) [8] [9] 0.5 1.23 0.00 36670 Material::totalDecompose(void) [9] ----------------------------------------------- 0.00 0.00 2769/1301093 PeptideString::rChar(void) [39] 0.00 0.00 4774/1301093 Chromosome::Chromosome(Chromosome &, double) [11] 0.00 0.00 5379/1301093 PeptideString::mutateOnce(mutret_t &) [26] 0.05 0.00 110852/1301093 Literator::getOne(void) [16] 0.52 0.00 1177319/1301093 Organism::live(void) [2] [10] 0.2 0.58 0.00 1301093 z1_Rnd::Gen1(void) [10] ----------------------------------------------- 0.00 0.02 108/1582 Organism::Organism(Chromosome &, Material &, int, int, char) [33] 0.01 0.29 1474/1582 Organism::live(void) [2] [11] 0.1 0.01 0.31 1582 Chromosome::Chromosome(Chromosome &, double) [11] 0.00 0.15 2208/2239 Gene::Gene(PeptideString *, int, int, int, int) [14] 0.10 0.00 1582/1583 Material::Material(char const *) [18] 0.00 0.05 2666/2666 PeptideString::mutateOnce(mutret_t &) [26] 0.00 0.00 4774/1301093 z1_Rnd::Gen1(void) [10] 0.00 0.00 20/2258 PeptideString::subString(int, int) const [45] 0.00 0.00 20/20 PeptideString::prependGene(PeptideString *) [52] 0.00 0.00 8/8 PeptideString::replaceGene(int, int, PeptideString *) [53] 0.00 0.00 1/1 PeptideString::split(int) [58] 0.00 0.00 1/1 PeptideString::insert(PeptideString *, int) [57] ----------------------------------------------- [12] 0.1 0.17 0.00 yylex [12] ----------------------------------------------- 0.08 0.00 35964/72000 Location::updateShare(void) [5] 0.08 0.00 36036/72000 Location::WorldPop(void) [22] [13] 0.1 0.16 0.00 72000 BaseList::length(void) [13] ----------------------------------------------- 0.00 0.00 31/2239 Chromosome::Chromosome(char *) [38] 0.00 0.15 2208/2239 Chromosome::Chromosome(Chromosome &, double) [11] [14] 0.1 0.00 0.15 2239 Gene::Gene(PeptideString *, int, int, int, int) [14] 0.00 0.09 2238/2238 Protopeptide::lookup(PeptideString *, short *, int *) [21] 0.06 0.00 2238/3191 Material::Material(PeptideString const *) [20] 0.00 0.00 2238/2258 PeptideString::subString(int, int) const [45] ----------------------------------------------- 0.00 0.00 2048/710414 datalog(int) [24] 0.06 0.00 309957/710414 Location::updateShare(void) [5] 0.07 0.00 398409/710414 main [1] [15] 0.1 0.13 0.00 710414 BiotaIterator::getNext(void) [15] ----------------------------------------------- 0.03 0.02 36926/110852 Location::decompose(void) [8] 0.03 0.02 36963/110852 Location::updateShare(void) [5] 0.03 0.02 36963/110852 main [1] [16] 0.1 0.08 0.05 110852 Literator::getOne(void) [16] 0.05 0.00 110852/1301093 z1_Rnd::Gen1(void) [10] ----------------------------------------------- 0.06 0.01 1/2 epilogue(char *) [23] 0.06 0.01 1/2 main [1] [17] 0.1 0.11 0.01 2 Location::biomassSummary(int) [17] 0.01 0.00 519/3191 Material::Material(PeptideString const *) [20] 0.00 0.00 1/36670 Material::totalDecompose(void) [9] ----------------------------------------------- 0.00 0.00 1/1583 Chromosome::Chromosome(char *) [38] 0.10 0.00 1582/1583 Chromosome::Chromosome(Chromosome &, double) [11] [18] 0.0 0.10 0.00 1583 Material::Material(char const *) [18] ----------------------------------------------- 0.00 0.00 1/147709 __do_global_ctors_aux [42] 0.09 0.00 147708/147709 Protopeptide::lookup(PeptideString *, short *, int *) [21] [19] 0.0 0.09 0.00 147709 PeptideString::match(PeptideString *, int) [19] 0.00 0.00 1/1 __static_initialization_and_destruction_0 [153] ----------------------------------------------- 0.01 0.00 434/3191 Organism::die(void) [34] 0.01 0.00 519/3191 Location::biomassSummary(int) [17] 0.06 0.00 2238/3191 Gene::Gene(PeptideString *, int, int, int, int) [14] [20] 0.0 0.09 0.00 3191 Material::Material(PeptideString const *) [20] ----------------------------------------------- 0.00 0.09 2238/2238 Gene::Gene(PeptideString *, int, int, int, int) [14] [21] 0.0 0.00 0.09 2238 Protopeptide::lookup(PeptideString *, short *, int *) [21] 0.09 0.00 147708/147709 PeptideString::match(PeptideString *, int) [19] 0.00 0.00 2238/2238 PeptideString::skipGene(char *, int) [46] ----------------------------------------------- 0.00 0.00 1/1001 epilogue(char *) [23] 0.00 0.08 1000/1001 main [1] [22] 0.0 0.00 0.08 1001 Location::WorldPop(void) [22] 0.08 0.00 36036/72000 BaseList::length(void) [13] ----------------------------------------------- 0.00 0.06 1/1 main [1] [23] 0.0 0.00 0.06 1 epilogue(char *) [23] 0.06 0.01 1/2 Location::biomassSummary(int) [17] 0.00 0.00 1/1001 Location::WorldPop(void) [22] 0.00 0.00 1/2 Location::resourceSummary(int) [40] 0.00 0.00 2/7 operator<<(ostream &, Material const &) [150] 0.00 0.00 1/8 operator<<(ostream &, Date const &) [149] ----------------------------------------------- 0.00 0.06 7/7 main [1] [24] 0.0 0.00 0.06 7 datalog(int) [24] 0.02 0.04 1796/1796 Organism::datalog(ostream &) [25] 0.00 0.00 2048/710414 BiotaIterator::getNext(void) [15] 0.00 0.00 252/252 EnVar::datalog(ostream &) [49] 0.00 0.00 252/2048 Material::datalog(ostream &) [47] 0.00 0.00 7/8 operator<<(ostream &, Date const &) [149] ----------------------------------------------- 0.02 0.04 1796/1796 datalog(int) [24] [25] 0.0 0.02 0.04 1796 Organism::datalog(ostream &) [25] 0.04 0.00 1796/1796 Organism::dltraits(ostream &) [31] 0.00 0.00 1796/2048 Material::datalog(ostream &) [47] ----------------------------------------------- 0.00 0.05 2666/2666 Chromosome::Chromosome(Chromosome &, double) [11] [26] 0.0 0.00 0.05 2666 PeptideString::mutateOnce(mutret_t &) [26] 0.05 0.00 2666/2666 Urn::reset(void) [27] 0.00 0.00 5379/1301093 z1_Rnd::Gen1(void) [10] 0.00 0.00 2769/2769 PeptideString::rChar(void) [39] ----------------------------------------------- 0.05 0.00 2666/2666 PeptideString::mutateOnce(mutret_t &) [26] [27] 0.0 0.05 0.00 2666 Urn::reset(void) [27] ----------------------------------------------- 0.00 0.00 434/264387 Organism::die(void) [34] 0.04 0.01 263953/264387 Organism::live(void) [2] [28] 0.0 0.04 0.01 264387 Location::removeBiota(Organism *) [28] 0.01 0.00 264387/272998 BaseList::remove(void *) [37] ----------------------------------------------- 0.01 0.04 1/1 main [1] [29] 0.0 0.01 0.04 1 parse(char *, ostream &) [29] 0.01 0.03 108/108 Organism::Organism(Chromosome &, Material &, int, int, char) [33] 0.00 0.00 1/1 Chromosome::Chromosome(char *) [38] 0.00 0.00 1/36670 Material::totalDecompose(void) [9] 0.00 0.00 1/1 Material::partialDecompose(double) [41] 0.00 0.00 108/273467 BaseList::prepend(void *) [36] 0.00 0.00 36/36 EnVar::setDefaults(double *) [50] 0.00 0.00 36/36 Location::operator=(Location const &) [148] 0.00 0.00 4/7 operator<<(ostream &, Material const &) [150] 0.00 0.00 1/1 PeptideString::init(int) [56] ----------------------------------------------- 0.01 0.03 35964/35964 Location::updateShare(void) [5] [30] 0.0 0.01 0.03 35964 Location::updateEnv(void) [30] 0.03 0.00 71928/71928 Location::calculateModifier(int) [35] ----------------------------------------------- 0.04 0.00 1796/1796 Organism::datalog(ostream &) [25] [31] 0.0 0.04 0.00 1796 Organism::dltraits(ostream &) [31] ----------------------------------------------- [32] 0.0 0.04 0.00 yyparse [32] ----------------------------------------------- 0.01 0.03 108/108 parse(char *, ostream &) [29] [33] 0.0 0.01 0.03 108 Organism::Organism(Chromosome &, Material &, int, int, char) [33] 0.00 0.02 108/1582 Chromosome::Chromosome(Chromosome &, double) [11] 0.00 0.00 108/277573 Organism::calculateUptakeRates(void) [6] 0.00 0.00 108/278418 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- 0.02 0.01 434/434 Organism::live(void) [2] [34] 0.0 0.02 0.01 434 Organism::die(void) [34] 0.01 0.00 434/3191 Material::Material(PeptideString const *) [20] 0.00 0.00 8669/273467 BaseList::prepend(void *) [36] 0.00 0.00 434/264387 Location::removeBiota(Organism *) [28] 0.00 0.00 434/434 Organism::~Organism(void) [147] ----------------------------------------------- 0.03 0.00 71928/71928 Location::updateEnv(void) [30] [35] 0.0 0.03 0.00 71928 Location::calculateModifier(int) [35] ----------------------------------------------- 0.00 0.00 108/273467 parse(char *, ostream &) [29] 0.00 0.00 8669/273467 Organism::die(void) [34] 0.02 0.00 264690/273467 Organism::live(void) [2] [36] 0.0 0.02 0.00 273467 BaseList::prepend(void *) [36] ----------------------------------------------- 0.00 0.00 8611/272998 Location::decompose(void) [8] 0.01 0.00 264387/272998 Location::removeBiota(Organism *) [28] [37] 0.0 0.01 0.00 272998 BaseList::remove(void *) [37] ----------------------------------------------- 0.00 0.00 1/1 parse(char *, ostream &) [29] [38] 0.0 0.00 0.00 1 Chromosome::Chromosome(char *) [38] 0.00 0.00 31/2239 Gene::Gene(PeptideString *, int, int, int, int) [14] 0.00 0.00 1/1583 Material::Material(char const *) [18] 0.00 0.00 31/31 PeptideString::nextGene(char **) [51] 0.00 0.00 1/1 PeptideString::geneCount(void) const [55] ----------------------------------------------- 0.00 0.00 2769/2769 PeptideString::mutateOnce(mutret_t &) [26] [39] 0.0 0.00 0.00 2769 PeptideString::rChar(void) [39] 0.00 0.00 2769/1301093 z1_Rnd::Gen1(void) [10] ----------------------------------------------- 0.00 0.00 1/2 epilogue(char *) [23] 0.00 0.00 1/2 main [1] [40] 0.0 0.00 0.00 2 Location::resourceSummary(int) [40] 0.00 0.00 2/36670 Material::totalDecompose(void) [9] ----------------------------------------------- 0.00 0.00 1/1 parse(char *, ostream &) [29] [41] 0.0 0.00 0.00 1 Material::partialDecompose(double) [41] 0.00 0.00 1/36670 Material::totalDecompose(void) [9] ----------------------------------------------- [42] 0.0 0.00 0.00 __do_global_ctors_aux [42] 0.00 0.00 1/147709 PeptideString::match(PeptideString *, int) [19] 0.00 0.00 1/2 HandleINT [54] 0.00 0.00 1/1 z1_Rnd::~z1_Rnd(void) [152] ----------------------------------------------- 0.00 0.00 11296/11296 Organism::live(void) [2] [43] 0.0 0.00 0.00 11296 Position::moveW(int, int) [43] ----------------------------------------------- 0.00 0.00 10662/10662 Organism::live(void) [2] [44] 0.0 0.00 0.00 10662 Position::moveE(int, int) [44] ----------------------------------------------- 0.00 0.00 20/2258 Chromosome::Chromosome(Chromosome &, double) [11] 0.00 0.00 2238/2258 Gene::Gene(PeptideString *, int, int, int, int) [14] [45] 0.0 0.00 0.00 2258 PeptideString::subString(int, int) const [45] ----------------------------------------------- 0.00 0.00 2238/2238 Protopeptide::lookup(PeptideString *, short *, int *) [21] [46] 0.0 0.00 0.00 2238 PeptideString::skipGene(char *, int) [46] ----------------------------------------------- 0.00 0.00 252/2048 datalog(int) [24] 0.00 0.00 1796/2048 Organism::datalog(ostream &) [25] [47] 0.0 0.00 0.00 2048 Material::datalog(ostream &) [47] ----------------------------------------------- 0.00 0.00 999/999 main [1] [48] 0.0 0.00 0.00 999 Literator::reset(void) [48] ----------------------------------------------- 0.00 0.00 252/252 datalog(int) [24] [49] 0.0 0.00 0.00 252 EnVar::datalog(ostream &) [49] ----------------------------------------------- 0.00 0.00 36/36 parse(char *, ostream &) [29] [50] 0.0 0.00 0.00 36 EnVar::setDefaults(double *) [50] ----------------------------------------------- 0.00 0.00 31/31 Chromosome::Chromosome(char *) [38] [51] 0.0 0.00 0.00 31 PeptideString::nextGene(char **) [51] ----------------------------------------------- 0.00 0.00 20/20 Chromosome::Chromosome(Chromosome &, double) [11] [52] 0.0 0.00 0.00 20 PeptideString::prependGene(PeptideString *) [52] ----------------------------------------------- 0.00 0.00 8/8 Chromosome::Chromosome(Chromosome &, double) [11] [53] 0.0 0.00 0.00 8 PeptideString::replaceGene(int, int, PeptideString *) [53] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [163] 0.00 0.00 1/2 __do_global_ctors_aux [42] [54] 0.0 0.00 0.00 2 HandleINT [54] 0.00 0.00 2/2 __static_initialization_and_destruction_0 [151] ----------------------------------------------- 0.00 0.00 1/1 Chromosome::Chromosome(char *) [38] [55] 0.0 0.00 0.00 1 PeptideString::geneCount(void) const [55] ----------------------------------------------- 0.00 0.00 1/1 parse(char *, ostream &) [29] [56] 0.0 0.00 0.00 1 PeptideString::init(int) [56] ----------------------------------------------- 0.00 0.00 1/1 Chromosome::Chromosome(Chromosome &, double) [11] [57] 0.0 0.00 0.00 1 PeptideString::insert(PeptideString *, int) [57] ----------------------------------------------- 0.00 0.00 1/1 Chromosome::Chromosome(Chromosome &, double) [11] [58] 0.0 0.00 0.00 1 PeptideString::split(int) [58] ----------------------------------------------- 0.00 0.00 1/1998 main [1] 0.00 0.00 998/1998 Location::decompose(void) [8] 0.00 0.00 999/1998 Location::updateShare(void) [5] [146] 0.0 0.00 0.00 1998 Literator::Literator(void) [146] ----------------------------------------------- 0.00 0.00 434/434 Organism::die(void) [34] [147] 0.0 0.00 0.00 434 Organism::~Organism(void) [147] ----------------------------------------------- 0.00 0.00 36/36 parse(char *, ostream &) [29] [148] 0.0 0.00 0.00 36 Location::operator=(Location const &) [148] ----------------------------------------------- 0.00 0.00 1/8 epilogue(char *) [23] 0.00 0.00 7/8 datalog(int) [24] [149] 0.0 0.00 0.00 8 operator<<(ostream &, Date const &) [149] ----------------------------------------------- 0.00 0.00 1/7 main [1] 0.00 0.00 2/7 epilogue(char *) [23] 0.00 0.00 4/7 parse(char *, ostream &) [29] [150] 0.0 0.00 0.00 7 operator<<(ostream &, Material const &) [150] ----------------------------------------------- 0.00 0.00 2/2 HandleINT [54] [151] 0.0 0.00 0.00 2 __static_initialization_and_destruction_0 [151] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [42] [152] 0.0 0.00 0.00 1 z1_Rnd::~z1_Rnd(void) [152] 0.00 0.00 1/1 __static_initialization_and_destruction_0 [154] ----------------------------------------------- 0.00 0.00 1/1 PeptideString::match(PeptideString *, int) [19] [153] 0.0 0.00 0.00 1 __static_initialization_and_destruction_0 [153] ----------------------------------------------- 0.00 0.00 1/1 z1_Rnd::~z1_Rnd(void) [152] [154] 0.0 0.00 0.00 1 __static_initialization_and_destruction_0 [154] ----------------------------------------------- This table describes the call tree of the program, and was sorted by the total amount of time spent in each function and its children. Each entry in this table consists of several lines. The line with the index number at the left hand margin lists the current function. The lines above it list the functions that called this function, and the lines below it list the functions this one called. This line lists: index A unique number given to each element of the table. Index numbers are sorted numerically. The index number is printed next to every function name so it is easier to look up where the function in the table. % time This is the percentage of the `total' time that was spent in this function and its children. Note that due to different viewpoints, functions excluded by options, etc, these numbers will NOT add up to 100%. self This is the total amount of time spent in this function. children This is the total amount of time propagated into this function by its children. called This is the number of times the function was called. If the function called itself recursively, the number only includes non-recursive calls, and is followed by a `+' and the number of recursive calls. name The name of the current function. The index number is printed after it. If the function is a member of a cycle, the cycle number is printed between the function's name and the index number. For the function's parents, the fields have the following meanings: self This is the amount of time that was propagated directly from the function into this parent. children This is the amount of time that was propagated from the function's children into this parent. called This is the number of times this parent called the function `/' the total number of times the function was called. Recursive calls to the function are not included in the number after the `/'. name This is the name of the parent. The parent's index number is printed after it. If the parent is a member of a cycle, the cycle number is printed between the name and the index number. If the parents of the function cannot be determined, the word `' is printed in the `name' field, and all the other fields are blank. For the function's children, the fields have the following meanings: self This is the amount of time that was propagated directly from the child into the function. children This is the amount of time that was propagated from the child's children to the function. called This is the number of times the function called this child `/' the total number of times the child was called. Recursive calls by the child are not listed in the number after the `/'. name This is the name of the child. The child's index number is printed after it. If the child is a member of a cycle, the cycle number is printed between the name and the index number. If there are any cycles (circles) in the call graph, there is an entry for the cycle-as-a-whole. This entry shows who called the cycle (as parents) and the members of the cycle (as children.) The `+' recursive calls entry shows the number of function calls that were internal to the cycle, and the calls entry for each member shows, for that member, how many times it was called from other members of the cycle. Index by function name [10] z1_Rnd::Gen1(void) [49] EnVar::datalog(ostream &) [51] PeptideString::nextGene(char **) [54] HandleINT [47] Material::datalog(ostream &) [29] parse(char *, ostream &) [22] Location::WorldPop(void) [25] Organism::datalog(ostream &) [41] Material::partialDecompose(double) [152] z1_Rnd::~z1_Rnd(void) [24] datalog(int) [52] PeptideString::prependGene(PeptideString *) [147] Organism::~Organism(void) [8] Location::decompose(void) [36] BaseList::prepend(void *) [38] Chromosome::Chromosome(char *) [34] Organism::die(void) [39] PeptideString::rChar(void) [11] Chromosome::Chromosome(Chromosome &, double) [31] Organism::dltraits(ostream &) [3] Reaction::react(double, Material &) [14] Gene::Gene(PeptideString *, int, int, int, int) [23] epilogue(char *) [28] Location::removeBiota(Organism *) [20] Material::Material(PeptideString const *) [4] Reaction::equilibriumP(Material &) [37] BaseList::remove(void *) [18] Material::Material(char const *) [55] PeptideString::geneCount(void) const [53] PeptideString::replaceGene(int, int, PeptideString *) [33] Organism::Organism(Chromosome &, Material &, int, int, char) [15] BiotaIterator::getNext(void) [27] Urn::reset(void) [146] Literator::Literator(void) [16] Literator::getOne(void) [48] Literator::reset(void) [148] Location::operator=(Location const &) [56] PeptideString::init(int) [40] Location::resourceSummary(int) [149] operator<<(ostream &, Date const &) [57] PeptideString::insert(PeptideString *, int) [50] EnVar::setDefaults(double *) [150] operator<<(ostream &, Material const &) [13] BaseList::length(void) [46] PeptideString::skipGene(char *, int) [151] __static_initialization_and_destruction_0 (vector.h) [2] Organism::live(void) [58] PeptideString::split(int) [153] __static_initialization_and_destruction_0 (peptidestring.C) [21] Protopeptide::lookup(PeptideString *, short *, int *) [45] PeptideString::subString(int, int) const [154] __static_initialization_and_destruction_0 (random.C) [1] main [9] Material::totalDecompose(void) [17] Location::biomassSummary(int) [19] PeptideString::match(PeptideString *, int) [30] Location::updateEnv(void) [7] Organism::calculateEfficiencies(void) [44] Position::moveE(int, int) [5] Location::updateShare(void) [35] Location::calculateModifier(int) [43] Position::moveW(int, int) [12] yylex [6] Organism::calculateUptakeRates(void) [26] PeptideString::mutateOnce(mutret_t &) [32] yyparse