call graph profile: The sum of self and descendents is the major sort for this listing. function entries: index the index of the function in the call graph listing, as an aid to locating it (see below). %time the percentage of the total time of the program accounted for by this function and its descendents. self the number of seconds spent in this function itself. descendents the number of seconds spent in the descendents of this function on behalf of this function. called the number of times this function is called (other than recursive calls). self the number of times this function calls itself recursively. name the name of the function, with an indication of its membership in a cycle, if any. index the index of the function in the call graph listing, as an aid to locating it. parent listings: self* the number of seconds of this function's self time which is due to calls from this parent. descendents* the number of seconds of this function's descendent time which is due to calls from this parent. called** the number of times this function is called by this parent. This is the numerator of the fraction which divides up the function's time to its parents. total* the number of times this function was called by all of its parents. This is the denominator of the propagation fraction. parents the name of this parent, with an indication of the parent's membership in a cycle, if any. index the index of this parent in the call graph listing, as an aid in locating it. children listings: self* the number of seconds of this child's self time which is due to being called by this function. descendent* the number of seconds of this child's descendent's time which is due to being called by this function. called** the number of times this child is called by this function. This is the numerator of the propagation fraction for this child. total* the number of times this child is called by all functions. This is the denominator of the propagation fraction. children the name of this child, and an indication of its membership in a cycle, if any. index the index of this child in the call graph listing, as an aid to locating it. * these fields are omitted for parents (or children) in the same cycle as the function. If the function (or child) is a member of a cycle, the propagated times and propagation denominator represent the self time and descendent time of the cycle as a whole. ** static-only parents and children are indicated by a call count of 0. cycle listings: the cycle as a whole is listed with the same fields as a function entry. Below it are listed the members of the cycle, and their contributions to the time and call counts of the cycle. granularity: each sample hit covers 8 byte(s) for 0.00% of 285.35 seconds called/total parents index %time self descendents called+self name index called/total children 0.15 284.27 1/1 __start [2] [1] 99.7 0.15 284.27 1 main [1] 30.95 243.24 370487/370487 _ZN8Organism4liveEv [3] 0.60 6.18 999/999 _ZN8Location11updateShareEv [8] 0.67 2.33 998/998 _ZN8Location9decomposeEv [13] 0.12 0.00 406451/408536 _ZN13BiotaIterator7getNextEv [26] 0.00 0.09 1/2 _ZN8Location14biomassSummaryEi [22] 0.00 0.05 1000/1001 _ZN8Location8WorldPopEv [40] 0.03 0.01 36963/36963 _ZN9Literator6getOneEv [44] 0.00 0.00 1/2 _ZN8Location15resourceSummaryEi [68] 0.00 0.00 1/42131613 _ZN6VectorIdEC2Eid [6] 0.00 0.00 999/999 _ZN9Literator5resetEv [112] 0.00 0.00 1/7 _ZlsRSoRK8Material [122] 0.00 0.00 1/1 _ZN9LiteratorC1Ev [141] ----------------------------------------------- 30.95 243.24 370487/370487 main [1] [3] 96.1 30.95 243.24 370487 _ZN8Organism4liveEv [3] 128.38 95.85 7765707/7765707 _ZN8Reaction5reactEdR8Material [4] 6.85 0.39 5244006/13142367 _ZN6VectorIdEC2ERKS0_ [7] 5.24 0.87 961241/961688 _ZN8Material16exchangeMaterialES_ [9] 2.10 0.19 2537003/42131613 _ZN6VectorIdEC2Eid [6] 1.22 0.00 9237531/9237531 _ZN12Protopeptide6effectEiR5EnVarR8Material [15] 0.84 0.00 920362/920362 _ZN10Chromosome9findCodonEi [16] 0.48 0.00 1202167/1326361 _ZN6z1_Rnd4Gen1Ev [18] 0.01 0.21 760/760 _ZN8OrganismC1ERS_P10Chromosome [20] 0.01 0.19 760/1628 _ZN10ChromosomeC1ERS_d [19] 0.08 0.11 268971/269418 _ZN8Location11removeBiotaEP8Organism [21] 0.04 0.00 760/36692 _ZN8Material14totalDecomposeEv [14] 0.04 0.00 68046/135834 _ZN8Position5moveWEii [47] 0.04 0.00 67788/135834 _ZN8Position5moveSEii [45] 0.03 0.00 269731/278744 _ZN8BaseList7prependEPv [46] 0.02 0.00 68439/133137 _ZN8Position5moveEEii [53] 0.02 0.00 64698/133137 _ZN8Position5moveNEii [54] 0.02 0.00 19601/20469 _ZN10Chromosome14nextGeneOffsetEi [56] 0.01 0.00 23946/30623 _ZN6VectorIdEnwEm [58] ----------------------------------------------- 128.38 95.85 7765707/7765707 _ZN8Organism4liveEv [3] [4] 78.6 128.38 95.85 7765707 _ZN8Reaction5reactEdR8Material [4] 50.55 0.00 21180824/21180824 _ZN8Reaction12equilibriumPER8Material [5] 31.76 2.81 38288580/42131613 _ZN6VectorIdEC2Eid [6] 10.15 0.57 7765707/13142367 _ZN6VectorIdEC2ERKS0_ [7] ----------------------------------------------- 50.55 0.00 21180824/21180824 _ZN8Reaction5reactEdR8Material [4] [5] 17.7 50.55 0.00 21180824 _ZN8Reaction12equilibriumPER8Material [5] ----------------------------------------------- 0.00 0.00 1/42131613 main [1] 0.00 0.00 1/42131613 _ZN8MaterialC2EPKc [76] 0.00 0.00 6/42131613 _Z5parsePcRSo [38] 0.00 0.00 71/42131613 _ZN8MaterialC2Ed [73] 0.00 0.00 92/42131613 _ZN8Location15resourceSummaryEi [68] 0.00 0.00 216/42131613 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 0.00 0.00 531/42131613 _ZN8Location14biomassSummaryEi [22] 0.00 0.00 976/42131613 _ZN8MaterialC1EPK13PeptideString [30] 0.00 0.00 1628/42131613 _ZN10ChromosomeC1ERS_d [19] 0.00 0.00 1628/42131613 _ZN8MaterialC1EPKc [23] 0.00 0.00 2298/42131613 _ZN8MaterialC2EPK13PeptideString [57] 0.00 0.00 3040/42131613 _ZN8OrganismC1ERS_P10Chromosome [20] 0.03 0.00 35928/42131613 _ZN8Location9decomposeEv [13] 0.05 0.00 63162/42131613 _ZN8MaterialC1Ed [25] 0.19 0.02 234764/42131613 _ZN8Material14totalDecomposeEv [14] 0.80 0.07 961688/42131613 _ZN8Material16exchangeMaterialES_ [9] 2.10 0.19 2537003/42131613 _ZN8Organism4liveEv [3] 31.76 2.81 38288580/42131613 _ZN8Reaction5reactEdR8Material [4] [6] 13.3 34.95 3.10 42131613 _ZN6VectorIdEC2Eid [6] 3.10 0.00 42131613/55273980 _ZN6VectorIdE7newdataEi [12] ----------------------------------------------- 0.00 0.00 1/13142367 _ZN8Material16partialDecomposeEd [75] 0.00 0.00 18/13142367 _ZN7ProteinC1ERS_ [74] 0.00 0.00 36/13142367 _Z5parsePcRSo [38] 0.00 0.00 90/13142367 _ZN8Location15resourceSummaryEi [68] 0.00 0.00 432/13142367 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 0.00 0.00 447/13142367 _ZN8Organism3dieEv [37] 0.00 0.00 1520/13142367 _ZN8OrganismC1ERS_P10Chromosome [20] 0.00 0.00 3348/13142367 _ZN4GeneC1ERS_i [59] 0.17 0.01 126762/13142367 _ZN8Location9decomposeEv [13] 6.85 0.39 5244006/13142367 _ZN8Organism4liveEv [3] 10.15 0.57 7765707/13142367 _ZN8Reaction5reactEdR8Material [4] [7] 6.4 17.18 0.97 13142367 _ZN6VectorIdEC2ERKS0_ [7] 0.97 0.00 13142367/55273980 _ZN6VectorIdE7newdataEi [12] ----------------------------------------------- 0.60 6.18 999/999 main [1] [8] 2.4 0.60 6.18 999 _ZN8Location11updateShareEv [8] 1.46 4.60 281920/282028 _ZN8Organism20calculateUptakeRatesEv [10] 0.05 0.00 35964/72000 _ZN8BaseList6lengthEv [29] 0.02 0.03 35964/35964 _ZN8Location9updateEnvEv [41] 0.01 0.00 36963/1326361 _ZN6z1_Rnd4Gen1Ev [18] ----------------------------------------------- 0.00 0.00 447/961688 _ZN8Organism3dieEv [37] 5.24 0.87 961241/961688 _ZN8Organism4liveEv [3] [9] 2.1 5.24 0.87 961688 _ZN8Material16exchangeMaterialES_ [9] 0.80 0.07 961688/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 0.00 0.00 108/282028 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 1.46 4.60 281920/282028 _ZN8Location11updateShareEv [8] [10] 2.1 1.46 4.60 282028 _ZN8Organism20calculateUptakeRatesEv [10] 4.60 0.00 282788/282896 _ZN8Organism21calculateEfficienciesEv [11] ----------------------------------------------- 0.00 0.00 108/282896 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 4.60 0.00 282788/282896 _ZN8Organism20calculateUptakeRatesEv [10] [11] 1.6 4.60 0.00 282896 _ZN8Organism21calculateEfficienciesEv [11] ----------------------------------------------- 0.97 0.00 13142367/55273980 _ZN6VectorIdEC2ERKS0_ [7] 3.10 0.00 42131613/55273980 _ZN6VectorIdEC2Eid [6] [12] 1.4 4.06 0.00 55273980 _ZN6VectorIdE7newdataEi [12] 0.00 0.00 513/986 _ZN6VectorIdE17expandTheFreeListEPP14NextOnFreeListm [113] ----------------------------------------------- 0.67 2.33 998/998 main [1] [13] 1.0 0.67 2.33 998 _ZN8Location9decomposeEv [13] 1.80 0.21 35928/36692 _ZN8Material14totalDecomposeEv [14] 0.17 0.01 126762/13142367 _ZN6VectorIdEC2ERKS0_ [7] 0.05 0.04 45417/63162 _ZN8MaterialC1Ed [25] 0.03 0.00 35928/42131613 _ZN6VectorIdEC2Eid [6] 0.01 0.00 36926/1326361 _ZN6z1_Rnd4Gen1Ev [18] 0.00 0.00 90834/110002 _ZN6VectorIdED2Ev [62] 0.00 0.00 8815/278233 _ZN8BaseList6removeEPv [52] 0.00 0.00 8815/8815 _ZN4ListIP7ProteinE4findES1_ [111] ----------------------------------------------- 0.00 0.00 1/36692 _ZN8Location14biomassSummaryEi [22] 0.00 0.00 1/36692 _Z5parsePcRSo [38] 0.00 0.00 2/36692 _ZN8Location15resourceSummaryEi [68] 0.04 0.00 760/36692 _ZN8Organism4liveEv [3] 1.80 0.21 35928/36692 _ZN8Location9decomposeEv [13] [14] 0.7 1.84 0.21 36692 _ZN8Material14totalDecomposeEv [14] 0.19 0.02 234764/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 1.22 0.00 9237531/9237531 _ZN8Organism4liveEv [3] [15] 0.4 1.22 0.00 9237531 _ZN12Protopeptide6effectEiR5EnVarR8Material [15] ----------------------------------------------- 0.84 0.00 920362/920362 _ZN8Organism4liveEv [3] [16] 0.3 0.84 0.00 920362 _ZN10Chromosome9findCodonEi [16] ----------------------------------------------- 0.00 0.00 2749/1326361 _ZN3Urn4drawEv [69] 0.00 0.00 4915/1326361 _ZN10ChromosomeC1ERS_d [19] 0.00 0.00 5678/1326361 _ZN13PeptideString10mutateOnceER8mutret_t [31] 0.01 0.00 36926/1326361 _ZN8Location9decomposeEv [13] 0.01 0.00 36963/1326361 _ZN8Location11updateShareEv [8] 0.01 0.00 36963/1326361 _ZN9Literator6getOneEv [44] 0.48 0.00 1202167/1326361 _ZN8Organism4liveEv [3] [18] 0.2 0.53 0.00 1326361 _ZN6z1_Rnd4Gen1Ev [18] ----------------------------------------------- 0.00 0.03 108/1628 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 0.01 0.19 760/1628 _ZN8Organism4liveEv [3] 0.01 0.19 760/1628 _ZN8OrganismC1ERS_P10Chromosome [20] [19] 0.2 0.03 0.41 1628 _ZN10ChromosomeC1ERS_d [19] 0.17 0.00 1628/1628 _ZN8MaterialC1EPKc [23] 0.01 0.13 2267/2298 _ZN4GeneC1EP13PeptideStringiiii [24] 0.10 0.00 2749/2749 _ZN13PeptideString10mutateOnceER8mutret_t [31] 0.00 0.00 4915/1326361 _ZN6z1_Rnd4Gen1Ev [18] 0.00 0.00 1628/42131613 _ZN6VectorIdEC2Eid [6] 0.00 0.00 18/18 _ZN7ProteinC1ERS_ [74] 0.00 0.00 18/2316 _ZNK13PeptideString9subStringEii [67] 0.00 0.00 18/30623 _ZN6VectorIdEnwEm [58] 0.00 0.00 18/18 _ZN13PeptideString11prependGeneEPS_ [119] 0.00 0.00 13/13 _ZN13PeptideString11replaceGeneEiiPS_ [120] ----------------------------------------------- 0.01 0.21 760/760 _ZN8Organism4liveEv [3] [20] 0.1 0.01 0.21 760 _ZN8OrganismC1ERS_P10Chromosome [20] 0.01 0.19 760/1628 _ZN10ChromosomeC1ERS_d [19] 0.00 0.00 3040/42131613 _ZN6VectorIdEC2Eid [6] 0.00 0.00 1520/13142367 _ZN6VectorIdEC2ERKS0_ [7] 0.00 0.00 760/20469 _ZN10Chromosome14nextGeneOffsetEi [56] 0.00 0.00 760/30623 _ZN6VectorIdEnwEm [58] ----------------------------------------------- 0.00 0.00 447/269418 _ZN8Organism3dieEv [37] 0.08 0.11 268971/269418 _ZN8Organism4liveEv [3] [21] 0.1 0.08 0.11 269418 _ZN8Location11removeBiotaEP8Organism [21] 0.09 0.00 538836/538836 _ZN4ListIP8OrganismE4findES1_ [33] 0.02 0.00 269418/278233 _ZN8BaseList6removeEPv [52] ----------------------------------------------- 0.00 0.09 1/2 _Z8epiloguePc [32] 0.00 0.09 1/2 main [1] [22] 0.1 0.01 0.18 2 _ZN8Location14biomassSummaryEi [22] 0.05 0.03 16687/16687 _ZNK8MaterialmlEd [34] 0.06 0.00 529/976 _ZN8MaterialC1EPK13PeptideString [30] 0.03 0.00 17745/17745 _ZN8MaterialpLERKS_ [50] 0.00 0.00 1058/1058 _ZNK8MaterialplERKS_ [60] 0.00 0.00 18274/110002 _ZN6VectorIdED2Ev [62] 0.00 0.00 531/42131613 _ZN6VectorIdEC2Eid [6] 0.00 0.00 1/36692 _ZN8Material14totalDecomposeEv [14] ----------------------------------------------- 0.17 0.00 1628/1628 _ZN10ChromosomeC1ERS_d [19] [23] 0.1 0.17 0.00 1628 _ZN8MaterialC1EPKc [23] 0.00 0.00 1628/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 0.00 0.00 31/2298 _ZN10ChromosomeC1EPc [65] 0.01 0.13 2267/2298 _ZN10ChromosomeC1ERS_d [19] [24] 0.0 0.01 0.13 2298 _ZN4GeneC1EP13PeptideStringiiii [24] 0.01 0.11 2298/2298 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [27] 0.01 0.00 2298/2298 _ZN8MaterialC2EPK13PeptideString [57] 0.00 0.00 2298/2316 _ZNK13PeptideString9subStringEii [67] 0.00 0.00 2298/30623 _ZN6VectorIdEnwEm [58] ----------------------------------------------- 0.00 0.00 1058/63162 _ZNK8MaterialplERKS_ [60] 0.02 0.02 16687/63162 _ZNK8MaterialmlEd [34] 0.05 0.04 45417/63162 _ZN8Location9decomposeEv [13] [25] 0.0 0.07 0.06 63162 _ZN8MaterialC1Ed [25] 0.05 0.00 63162/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 0.00 0.00 2085/408536 _Z7datalogi [48] 0.12 0.00 406451/408536 main [1] [26] 0.0 0.12 0.00 408536 _ZN13BiotaIterator7getNextEv [26] ----------------------------------------------- 0.01 0.11 2298/2298 _ZN4GeneC1EP13PeptideStringiiii [24] [27] 0.0 0.01 0.11 2298 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [27] 0.11 0.00 151668/151668 _ZN13PeptideString5matchEPS_i [28] 0.00 0.00 2298/2298 _ZN13PeptideString8skipGeneEPci [70] ----------------------------------------------- 0.11 0.00 151668/151668 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [27] [28] 0.0 0.11 0.00 151668 _ZN13PeptideString5matchEPS_i [28] ----------------------------------------------- 0.05 0.00 35964/72000 _ZN8Location11updateShareEv [8] 0.05 0.00 36036/72000 _ZN8Location8WorldPopEv [40] [29] 0.0 0.11 0.00 72000 _ZN8BaseList6lengthEv [29] ----------------------------------------------- 0.05 0.00 447/976 _ZN8Organism3dieEv [37] 0.06 0.00 529/976 _ZN8Location14biomassSummaryEi [22] [30] 0.0 0.10 0.00 976 _ZN8MaterialC1EPK13PeptideString [30] 0.00 0.00 976/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 0.10 0.00 2749/2749 _ZN10ChromosomeC1ERS_d [19] [31] 0.0 0.10 0.00 2749 _ZN13PeptideString10mutateOnceER8mutret_t [31] 0.00 0.00 5678/1326361 _ZN6z1_Rnd4Gen1Ev [18] 0.00 0.00 2749/2749 _ZN3Urn4drawEv [69] 0.00 0.00 28/28 _ZN13PeptideString10insertCharEic [72] ----------------------------------------------- [32] 0.0 0.00 0.09 _Z8epiloguePc [32] 0.00 0.09 1/2 _ZN8Location14biomassSummaryEi [22] 0.00 0.00 1/2 _ZN8Location15resourceSummaryEi [68] 0.00 0.00 1/1001 _ZN8Location8WorldPopEv [40] 0.00 0.00 2/7 _ZlsRSoRK8Material [122] 0.00 0.00 1/8 _ZlsRSoRK4Date [121] ----------------------------------------------- 0.09 0.00 538836/538836 _ZN8Location11removeBiotaEP8Organism [21] [33] 0.0 0.09 0.00 538836 _ZN4ListIP8OrganismE4findES1_ [33] ----------------------------------------------- 0.05 0.03 16687/16687 _ZN8Location14biomassSummaryEi [22] [34] 0.0 0.05 0.03 16687 _ZNK8MaterialmlEd [34] 0.02 0.02 16687/63162 _ZN8MaterialC1Ed [25] ----------------------------------------------- [37] 0.0 0.01 0.06 _ZN8Organism3dieEv [37] 0.05 0.00 447/976 _ZN8MaterialC1EPK13PeptideString [30] 0.01 0.00 5335/5335 _ZN7ProteinD1Ev [63] 0.00 0.00 447/961688 _ZN8Material16exchangeMaterialES_ [9] 0.00 0.00 8905/278744 _ZN8BaseList7prependEPv [46] 0.00 0.00 447/13142367 _ZN6VectorIdEC2ERKS0_ [7] 0.00 0.00 447/269418 _ZN8Location11removeBiotaEP8Organism [21] ----------------------------------------------- [38] 0.0 0.01 0.05 _Z5parsePcRSo [38] 0.00 0.04 108/108 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 0.00 0.00 1/1 _ZN10ChromosomeC1EPc [65] 0.00 0.00 71/71 _ZN8MaterialC2Ed [73] 0.00 0.00 1/36692 _ZN8Material14totalDecomposeEv [14] 0.00 0.00 36/13142367 _ZN6VectorIdEC2ERKS0_ [7] 0.00 0.00 108/278744 _ZN8BaseList7prependEPv [46] 0.00 0.00 37/30623 _ZN6VectorIdEnwEm [58] 0.00 0.00 6/42131613 _ZN6VectorIdEC2Eid [6] 0.00 0.00 1/1 _ZN8Material16partialDecomposeEd [75] 0.00 0.00 36/36 _ZN5EnVarC1ERKS_ [116] 0.00 0.00 36/36 _ZN6VectorIdEaSERKS0_ [117] 0.00 0.00 36/36 _ZN5EnVar11setDefaultsEPd [115] 0.00 0.00 4/7 _ZlsRSoRK8Material [122] 0.00 0.00 1/1 _ZN13PeptideString4initEi [138] 0.00 0.00 1/1 _ZN13ReactionTable10initializeEPdS0_ [139] ----------------------------------------------- 0.00 0.00 1/1001 _Z8epiloguePc [32] 0.00 0.05 1000/1001 main [1] [40] 0.0 0.00 0.05 1001 _ZN8Location8WorldPopEv [40] 0.05 0.00 36036/72000 _ZN8BaseList6lengthEv [29] ----------------------------------------------- 0.02 0.03 35964/35964 _ZN8Location11updateShareEv [8] [41] 0.0 0.02 0.03 35964 _ZN8Location9updateEnvEv [41] 0.03 0.00 71928/71928 _ZN8Location17calculateModifierEi [49] ----------------------------------------------- 0.00 0.04 108/108 _Z5parsePcRSo [38] [42] 0.0 0.00 0.04 108 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 0.00 0.03 108/1628 _ZN10ChromosomeC1ERS_d [19] 0.00 0.01 3348/3348 _ZN4GeneC1ERS_i [59] 0.00 0.00 108/282028 _ZN8Organism20calculateUptakeRatesEv [10] 0.00 0.00 108/282896 _ZN8Organism21calculateEfficienciesEv [11] 0.00 0.00 432/13142367 _ZN6VectorIdEC2ERKS0_ [7] 0.00 0.00 216/42131613 _ZN6VectorIdEC2Eid [6] 0.00 0.00 108/20469 _ZN10Chromosome14nextGeneOffsetEi [56] 0.00 0.00 216/30623 _ZN6VectorIdEnwEm [58] ----------------------------------------------- 0.03 0.01 36963/36963 main [1] [44] 0.0 0.03 0.01 36963 _ZN9Literator6getOneEv [44] 0.01 0.00 36963/1326361 _ZN6z1_Rnd4Gen1Ev [18] ----------------------------------------------- 11344 _ZN8Position5moveWEii [47] 0.04 0.00 67788/135834 _ZN8Organism4liveEv [3] [45] 0.0 0.04 0.00 79132 _ZN8Position5moveSEii [45] 11360 _ZN8Position5moveWEii [47] ----------------------------------------------- 0.00 0.00 108/278744 _Z5parsePcRSo [38] 0.00 0.00 8905/278744 _ZN8Organism3dieEv [37] 0.03 0.00 269731/278744 _ZN8Organism4liveEv [3] [46] 0.0 0.04 0.00 278744 _ZN8BaseList7prependEPv [46] ----------------------------------------------- 11360 _ZN8Position5moveSEii [45] 0.04 0.00 68046/135834 _ZN8Organism4liveEv [3] [47] 0.0 0.03 0.00 79406 _ZN8Position5moveWEii [47] 11344 _ZN8Position5moveSEii [45] ----------------------------------------------- [48] 0.0 0.00 0.03 _Z7datalogi [48] 0.01 0.02 1833/1833 _ZN8Organism7datalogERSo [51] 0.00 0.00 252/2085 _ZN8Material7datalogERSo [55] 0.00 0.00 2085/408536 _ZN13BiotaIterator7getNextEv [26] 0.00 0.00 252/252 _ZN5EnVar7datalogERSo [114] 0.00 0.00 7/8 _ZlsRSoRK4Date [121] ----------------------------------------------- 0.03 0.00 71928/71928 _ZN8Location9updateEnvEv [41] [49] 0.0 0.03 0.00 71928 _ZN8Location17calculateModifierEi [49] ----------------------------------------------- 0.03 0.00 17745/17745 _ZN8Location14biomassSummaryEi [22] [50] 0.0 0.03 0.00 17745 _ZN8MaterialpLERKS_ [50] ----------------------------------------------- 0.01 0.02 1833/1833 _Z7datalogi [48] [51] 0.0 0.01 0.02 1833 _ZN8Organism7datalogERSo [51] 0.02 0.00 1833/2085 _ZN8Material7datalogERSo [55] ----------------------------------------------- 0.00 0.00 8815/278233 _ZN8Location9decomposeEv [13] 0.02 0.00 269418/278233 _ZN8Location11removeBiotaEP8Organism [21] [52] 0.0 0.02 0.00 278233 _ZN8BaseList6removeEPv [52] ----------------------------------------------- 10753 _ZN8Position5moveNEii [54] 0.02 0.00 68439/133137 _ZN8Organism4liveEv [3] [53] 0.0 0.02 0.00 79192 _ZN8Position5moveEEii [53] 11445 _ZN8Position5moveNEii [54] ----------------------------------------------- 11445 _ZN8Position5moveEEii [53] 0.02 0.00 64698/133137 _ZN8Organism4liveEv [3] [54] 0.0 0.02 0.00 76143 _ZN8Position5moveNEii [54] 10753 _ZN8Position5moveEEii [53] ----------------------------------------------- 0.00 0.00 252/2085 _Z7datalogi [48] 0.02 0.00 1833/2085 _ZN8Organism7datalogERSo [51] [55] 0.0 0.02 0.00 2085 _ZN8Material7datalogERSo [55] ----------------------------------------------- 0.00 0.00 108/20469 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 0.00 0.00 760/20469 _ZN8OrganismC1ERS_P10Chromosome [20] 0.02 0.00 19601/20469 _ZN8Organism4liveEv [3] [56] 0.0 0.02 0.00 20469 _ZN10Chromosome14nextGeneOffsetEi [56] ----------------------------------------------- 0.01 0.00 2298/2298 _ZN4GeneC1EP13PeptideStringiiii [24] [57] 0.0 0.01 0.00 2298 _ZN8MaterialC2EPK13PeptideString [57] 0.00 0.00 2298/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 0.00 0.00 18/30623 _ZN10ChromosomeC1ERS_d [19] 0.00 0.00 37/30623 _Z5parsePcRSo [38] 0.00 0.00 216/30623 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 0.00 0.00 760/30623 _ZN8OrganismC1ERS_P10Chromosome [20] 0.00 0.00 2298/30623 _ZN4GeneC1EP13PeptideStringiiii [24] 0.00 0.00 3348/30623 _ZN4GeneC1ERS_i [59] 0.01 0.00 23946/30623 _ZN8Organism4liveEv [3] [58] 0.0 0.01 0.00 30623 _ZN6VectorIdEnwEm [58] 0.00 0.00 473/986 _ZN6VectorIdE17expandTheFreeListEPP14NextOnFreeListm [113] ----------------------------------------------- 0.00 0.01 3348/3348 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] [59] 0.0 0.00 0.01 3348 _ZN4GeneC1ERS_i [59] 0.00 0.00 3348/13142367 _ZN6VectorIdEC2ERKS0_ [7] 0.00 0.00 3348/30623 _ZN6VectorIdEnwEm [58] ----------------------------------------------- 0.00 0.00 1058/1058 _ZN8Location14biomassSummaryEi [22] [60] 0.0 0.00 0.00 1058 _ZNK8MaterialplERKS_ [60] 0.00 0.00 1058/63162 _ZN8MaterialC1Ed [25] ----------------------------------------------- [61] 0.0 0.01 0.00 _ZN8OrganismD1Ev [61] 0.00 0.00 894/894 _ZN13PeptideStringD2Ev [71] 0.00 0.00 894/110002 _ZN6VectorIdED2Ev [62] ----------------------------------------------- 0.00 0.00 894/110002 _ZN8OrganismD1Ev [61] 0.00 0.00 18274/110002 _ZN8Location14biomassSummaryEi [22] 0.00 0.00 90834/110002 _ZN8Location9decomposeEv [13] [62] 0.0 0.01 0.00 110002 _ZN6VectorIdED2Ev [62] ----------------------------------------------- 0.01 0.00 5335/5335 _ZN8Organism3dieEv [37] [63] 0.0 0.01 0.00 5335 _ZN7ProteinD1Ev [63] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [38] [65] 0.0 0.00 0.00 1 _ZN10ChromosomeC1EPc [65] 0.00 0.00 31/2298 _ZN4GeneC1EP13PeptideStringiiii [24] 0.00 0.00 1/1 _ZN8MaterialC2EPKc [76] 0.00 0.00 31/31 _ZN13PeptideString8nextGeneEPPc [118] 0.00 0.00 1/1 _ZNK13PeptideString9geneCountEv [142] ----------------------------------------------- 0.00 0.00 18/2316 _ZN10ChromosomeC1ERS_d [19] 0.00 0.00 2298/2316 _ZN4GeneC1EP13PeptideStringiiii [24] [67] 0.0 0.00 0.00 2316 _ZNK13PeptideString9subStringEii [67] ----------------------------------------------- 0.00 0.00 1/2 _Z8epiloguePc [32] 0.00 0.00 1/2 main [1] [68] 0.0 0.00 0.00 2 _ZN8Location15resourceSummaryEi [68] 0.00 0.00 90/13142367 _ZN6VectorIdEC2ERKS0_ [7] 0.00 0.00 2/36692 _ZN8Material14totalDecomposeEv [14] 0.00 0.00 92/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 0.00 0.00 2749/2749 _ZN13PeptideString10mutateOnceER8mutret_t [31] [69] 0.0 0.00 0.00 2749 _ZN3Urn4drawEv [69] 0.00 0.00 2749/1326361 _ZN6z1_Rnd4Gen1Ev [18] ----------------------------------------------- 0.00 0.00 2298/2298 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [27] [70] 0.0 0.00 0.00 2298 _ZN13PeptideString8skipGeneEPci [70] ----------------------------------------------- 0.00 0.00 894/894 _ZN8OrganismD1Ev [61] [71] 0.0 0.00 0.00 894 _ZN13PeptideStringD2Ev [71] ----------------------------------------------- 0.00 0.00 28/28 _ZN13PeptideString10mutateOnceER8mutret_t [31] [72] 0.0 0.00 0.00 28 _ZN13PeptideString10insertCharEic [72] ----------------------------------------------- 0.00 0.00 71/71 _Z5parsePcRSo [38] [73] 0.0 0.00 0.00 71 _ZN8MaterialC2Ed [73] 0.00 0.00 71/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 0.00 0.00 18/18 _ZN10ChromosomeC1ERS_d [19] [74] 0.0 0.00 0.00 18 _ZN7ProteinC1ERS_ [74] 0.00 0.00 18/13142367 _ZN6VectorIdEC2ERKS0_ [7] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [38] [75] 0.0 0.00 0.00 1 _ZN8Material16partialDecomposeEd [75] 0.00 0.00 1/13142367 _ZN6VectorIdEC2ERKS0_ [7] ----------------------------------------------- 0.00 0.00 1/1 _ZN10ChromosomeC1EPc [65] [76] 0.0 0.00 0.00 1 _ZN8MaterialC2EPKc [76] 0.00 0.00 1/42131613 _ZN6VectorIdEC2Eid [6] ----------------------------------------------- 0.00 0.00 8815/8815 _ZN8Location9decomposeEv [13] [111] 0.0 0.00 0.00 8815 _ZN4ListIP7ProteinE4findES1_ [111] ----------------------------------------------- 0.00 0.00 999/999 main [1] [112] 0.0 0.00 0.00 999 _ZN9Literator5resetEv [112] ----------------------------------------------- 0.00 0.00 473/986 _ZN6VectorIdEnwEm [58] 0.00 0.00 513/986 _ZN6VectorIdE7newdataEi [12] [113] 0.0 0.00 0.00 986 _ZN6VectorIdE17expandTheFreeListEPP14NextOnFreeListm [113] ----------------------------------------------- 0.00 0.00 252/252 _Z7datalogi [48] [114] 0.0 0.00 0.00 252 _ZN5EnVar7datalogERSo [114] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [38] [115] 0.0 0.00 0.00 36 _ZN5EnVar11setDefaultsEPd [115] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [38] [116] 0.0 0.00 0.00 36 _ZN5EnVarC1ERKS_ [116] ----------------------------------------------- 0.00 0.00 36/36 _Z5parsePcRSo [38] [117] 0.0 0.00 0.00 36 _ZN6VectorIdEaSERKS0_ [117] ----------------------------------------------- 0.00 0.00 31/31 _ZN10ChromosomeC1EPc [65] [118] 0.0 0.00 0.00 31 _ZN13PeptideString8nextGeneEPPc [118] ----------------------------------------------- 0.00 0.00 18/18 _ZN10ChromosomeC1ERS_d [19] [119] 0.0 0.00 0.00 18 _ZN13PeptideString11prependGeneEPS_ [119] ----------------------------------------------- 0.00 0.00 13/13 _ZN10ChromosomeC1ERS_d [19] [120] 0.0 0.00 0.00 13 _ZN13PeptideString11replaceGeneEiiPS_ [120] ----------------------------------------------- 0.00 0.00 1/8 _Z8epiloguePc [32] 0.00 0.00 7/8 _Z7datalogi [48] [121] 0.0 0.00 0.00 8 _ZlsRSoRK4Date [121] ----------------------------------------------- 0.00 0.00 1/7 main [1] 0.00 0.00 2/7 _Z8epiloguePc [32] 0.00 0.00 4/7 _Z5parsePcRSo [38] [122] 0.0 0.00 0.00 7 _ZlsRSoRK8Material [122] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [123] 0.0 0.00 0.00 1 _GLOBAL__I_TargetOrganism [123] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [124] 0.0 0.00 0.00 1 _GLOBAL__I__ZN10Chromosome6RegLenE [124] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [125] 0.0 0.00 0.00 1 _GLOBAL__I__ZN12Protopeptide13NoFunctionMsgE [125] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [126] 0.0 0.00 0.00 1 _GLOBAL__I__ZN13PeptideString3NILE [126] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [127] 0.0 0.00 0.00 1 _GLOBAL__I__ZN4Date11currentTimeE [127] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [128] 0.0 0.00 0.00 1 _GLOBAL__I__ZN6Serial12nextSerialNoE [128] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [129] 0.0 0.00 0.00 1 _GLOBAL__I__ZN6VectorIdE8datalistE [129] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [130] 0.0 0.00 0.00 1 _GLOBAL__I__ZN6z1_Rnd3RNGE [130] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [131] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8BaseList7prependEPv [131] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [132] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Location4NLocE [132] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [133] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Material7findMinEii [133] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [134] 0.0 0.00 0.00 1 _GLOBAL__I__ZN8Position1XE [134] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [135] 0.0 0.00 0.00 1 _GLOBAL__I__ZlsRSoR4Gene [135] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [136] 0.0 0.00 0.00 1 _GLOBAL__I__ZlsRSoR7Protein [136] ----------------------------------------------- 0.00 0.00 1/1 _GLOBAL__FI_evolve [159] [137] 0.0 0.00 0.00 1 _GLOBAL__I_sfn [137] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [38] [138] 0.0 0.00 0.00 1 _ZN13PeptideString4initEi [138] ----------------------------------------------- 0.00 0.00 1/1 _Z5parsePcRSo [38] [139] 0.0 0.00 0.00 1 _ZN13ReactionTable10initializeEPdS0_ [139] ----------------------------------------------- 0.00 0.00 1/1 _Z41__static_initialization_and_destruction_0ii [162] [140] 0.0 0.00 0.00 1 _ZN13ReactionTableC1Ei [140] ----------------------------------------------- 0.00 0.00 1/1 main [1] [141] 0.0 0.00 0.00 1 _ZN9LiteratorC1Ev [141] ----------------------------------------------- 0.00 0.00 1/1 _ZN10ChromosomeC1EPc [65] [142] 0.0 0.00 0.00 1 _ZNK13PeptideString9geneCountEv [142] ----------------------------------------------- flat profile: % the percentage of the total running time of the time program used by this function. cumulative a running sum of the number of seconds accounted seconds for by this function and those listed above it. self the number of seconds accounted for by this seconds function alone. This is the major sort for this listing. calls the number of times this function was invoked, if this function is profiled, else blank. self the average number of milliseconds spent in this ms/call function per call, if this function is profiled, else blank. total the average number of milliseconds spent in this ms/call function and its descendents per call, if this function is profiled, else blank. name the name of the function. This is the minor sort for this listing. The index shows the location of the function in the gprof listing. If the index is in parenthesis it shows where it would appear in the gprof listing if it were to be printed. granularity: each sample hit covers 8 byte(s) for 0.00% of 285.35 seconds % cumulative self self total time seconds seconds calls ms/call ms/call name 45.0 128.38 128.38 7765707 0.02 0.03 _ZN8Reaction5reactEdR8Material [4] 17.7 178.93 50.55 21180824 0.00 0.00 _ZN8Reaction12equilibriumPER8Material [5] 12.2 213.88 34.95 42131613 0.00 0.00 _ZN6VectorIdEC2Eid [6] 10.8 244.83 30.95 370487 0.08 0.74 _ZN8Organism4liveEv [3] 6.0 262.01 17.18 13142367 0.00 0.00 _ZN6VectorIdEC2ERKS0_ [7] 1.8 267.25 5.24 961688 0.01 0.01 _ZN8Material16exchangeMaterialES_ [9] 1.6 271.85 4.60 282896 0.02 0.02 _ZN8Organism21calculateEfficienciesEv [11] 1.4 275.92 4.06 55273980 0.00 0.00 _ZN6VectorIdE7newdataEi [12] 0.6 277.75 1.84 36692 0.05 0.06 _ZN8Material14totalDecomposeEv [14] 0.5 279.21 1.46 282028 0.01 0.02 _ZN8Organism20calculateUptakeRatesEv [10] 0.4 280.43 1.22 9237531 0.00 0.00 _ZN12Protopeptide6effectEiR5EnVarR8Material [15] 0.3 281.27 0.84 920362 0.00 0.00 _ZN10Chromosome9findCodonEi [16] 0.2 281.94 0.67 998 0.67 3.00 _ZN8Location9decomposeEv [13] 0.2 282.54 0.60 999 0.60 6.78 _ZN8Location11updateShareEv [8] 0.2 283.07 0.53 yylex [17] 0.2 283.60 0.53 1326361 0.00 0.00 _ZN6z1_Rnd4Gen1Ev [18] 0.1 283.77 0.17 1628 0.10 0.10 _ZN8MaterialC1EPKc [23] 0.1 283.91 0.15 1 145.83 284414.28 main [1] 0.0 284.03 0.12 408536 0.00 0.00 _ZN13BiotaIterator7getNextEv [26] 0.0 284.14 0.11 151668 0.00 0.00 _ZN13PeptideString5matchEPS_i [28] 0.0 284.25 0.11 72000 0.00 0.00 _ZN8BaseList6lengthEv [29] 0.0 284.35 0.10 976 0.11 0.11 _ZN8MaterialC1EPK13PeptideString [30] 0.0 284.45 0.10 2749 0.03 0.04 _ZN13PeptideString10mutateOnceER8mutret_t [31] 0.0 284.53 0.09 538836 0.00 0.00 _ZN4ListIP8OrganismE4findES1_ [33] 0.0 284.62 0.08 269418 0.00 0.00 _ZN8Location11removeBiotaEP8Organism [21] 0.0 284.70 0.08 yyparse [35] 0.0 284.77 0.07 63162 0.00 0.00 _ZN8MaterialC1Ed [25] 0.0 284.83 0.06 _ZN8Organism8dltraitsERSo [39] 0.0 284.88 0.05 16687 0.00 0.00 _ZNK8MaterialmlEd [34] 0.0 284.92 0.04 79132 0.00 0.00 _ZN8Position5moveSEii [45] 0.0 284.95 0.04 278744 0.00 0.00 _ZN8BaseList7prependEPv [46] 0.0 284.99 0.03 79406 0.00 0.00 _ZN8Position5moveWEii [47] 0.0 285.01 0.03 1628 0.02 0.27 _ZN10ChromosomeC1ERS_d [19] 0.0 285.04 0.03 71928 0.00 0.00 _ZN8Location17calculateModifierEi [49] 0.0 285.07 0.03 17745 0.00 0.00 _ZN8MaterialpLERKS_ [50] 0.0 285.10 0.03 36963 0.00 0.00 _ZN9Literator6getOneEv [44] 0.0 285.12 0.02 278233 0.00 0.00 _ZN8BaseList6removeEPv [52] 0.0 285.14 0.02 35964 0.00 0.00 _ZN8Location9updateEnvEv [41] 0.0 285.17 0.02 79192 0.00 0.00 _ZN8Position5moveEEii [53] 0.0 285.19 0.02 76143 0.00 0.00 _ZN8Position5moveNEii [54] 0.0 285.21 0.02 2085 0.01 0.01 _ZN8Material7datalogERSo [55] 0.0 285.23 0.02 20469 0.00 0.00 _ZN10Chromosome14nextGeneOffsetEi [56] 0.0 285.24 0.01 _Z5parsePcRSo [38] 0.0 285.25 0.01 2298 0.01 0.05 _ZN12Protopeptide6lookupEP13PeptideStringPsPi [27] 0.0 285.26 0.01 30623 0.00 0.00 _ZN6VectorIdEnwEm [58] 0.0 285.27 0.01 _ZN8Organism3dieEv [37] 0.0 285.28 0.01 2298 0.00 0.00 _ZN8MaterialC2EPK13PeptideString [57] 0.0 285.29 0.01 760 0.01 0.29 _ZN8OrganismC1ERS_P10Chromosome [20] 0.0 285.30 0.01 2298 0.00 0.06 _ZN4GeneC1EP13PeptideStringiiii [24] 0.0 285.30 0.01 1833 0.00 0.01 _ZN8Organism7datalogERSo [51] 0.0 285.31 0.01 2 2.92 90.57 _ZN8Location14biomassSummaryEi [22] 0.0 285.31 0.01 110002 0.00 0.00 _ZN6VectorIdED2Ev [62] 0.0 285.32 0.01 5335 0.00 0.00 _ZN7ProteinD1Ev [63] 0.0 285.32 0.01 _ZN8OrganismD1Ev [61] 0.0 285.33 0.00 1058 0.00 0.01 _ZNK8MaterialplERKS_ [60] 0.0 285.33 0.00 yy_get_previous_state [64] 0.0 285.33 0.00 3348 0.00 0.00 _ZN4GeneC1ERS_i [59] 0.0 285.34 0.00 _Z7datalogi [48] 0.0 285.34 0.00 2316 0.00 0.00 _ZNK13PeptideString9subStringEii [67] 0.0 285.34 0.00 yy_get_next_buffer [66] 0.0 285.34 0.00 2298 0.00 0.00 _ZN13PeptideString8skipGeneEPci [70] 0.0 285.34 0.00 1001 0.00 0.05 _ZN8Location8WorldPopEv [40] 0.0 285.34 0.00 894 0.00 0.00 _ZN13PeptideStringD2Ev [71] 0.0 285.34 0.00 108 0.01 0.40 _ZN8OrganismC1ER10ChromosomeR8Materialiic [42] 0.0 285.35 0.00 28 0.03 0.03 _ZN13PeptideString10insertCharEic [72] 0.0 285.35 0.00 2 0.42 0.58 _ZN8Location15resourceSummaryEi [68] 0.0 285.35 0.00 8815 0.00 0.00 _ZN4ListIP7ProteinE4findES1_ [111] 0.0 285.35 0.00 2749 0.00 0.00 _ZN3Urn4drawEv [69] 0.0 285.35 0.00 999 0.00 0.00 _ZN9Literator5resetEv [112] 0.0 285.35 0.00 986 0.00 0.00 _ZN6VectorIdE17expandTheFreeListEPP14NextOnFreeListm [113] 0.0 285.35 0.00 252 0.00 0.00 _ZN5EnVar7datalogERSo [114] 0.0 285.35 0.00 71 0.00 0.00 _ZN8MaterialC2Ed [73] 0.0 285.35 0.00 36 0.00 0.00 _ZN5EnVar11setDefaultsEPd [115] 0.0 285.35 0.00 36 0.00 0.00 _ZN5EnVarC1ERKS_ [116] 0.0 285.35 0.00 36 0.00 0.00 _ZN6VectorIdEaSERKS0_ [117] 0.0 285.35 0.00 31 0.00 0.00 _ZN13PeptideString8nextGeneEPPc [118] 0.0 285.35 0.00 18 0.00 0.00 _ZN13PeptideString11prependGeneEPS_ [119] 0.0 285.35 0.00 18 0.00 0.00 _ZN7ProteinC1ERS_ [74] 0.0 285.35 0.00 13 0.00 0.00 _ZN13PeptideString11replaceGeneEiiPS_ [120] 0.0 285.35 0.00 8 0.00 0.00 _ZlsRSoRK4Date [121] 0.0 285.35 0.00 7 0.00 0.00 _ZlsRSoRK8Material [122] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I_TargetOrganism [123] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN10Chromosome6RegLenE [124] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN12Protopeptide13NoFunctionMsgE [125] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN13PeptideString3NILE [126] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN4Date11currentTimeE [127] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN6Serial12nextSerialNoE [128] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN6VectorIdE8datalistE [129] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN6z1_Rnd3RNGE [130] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN8BaseList7prependEPv [131] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Location4NLocE [132] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Material7findMinEii [133] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZN8Position1XE [134] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZlsRSoR4Gene [135] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I__ZlsRSoR7Protein [136] 0.0 285.35 0.00 1 0.00 0.00 _GLOBAL__I_sfn [137] 0.0 285.35 0.00 1 0.00 1.89 _ZN10ChromosomeC1EPc [65] 0.0 285.35 0.00 1 0.00 0.00 _ZN13PeptideString4initEi [138] 0.0 285.35 0.00 1 0.00 0.00 _ZN13ReactionTable10initializeEPdS0_ [139] 0.0 285.35 0.00 1 0.00 0.00 _ZN13ReactionTableC1Ei [140] 0.0 285.35 0.00 1 0.00 0.00 _ZN8Material16partialDecomposeEd [75] 0.0 285.35 0.00 1 0.00 0.00 _ZN8MaterialC2EPKc [76] 0.0 285.35 0.00 1 0.00 0.00 _ZN9LiteratorC1Ev [141] 0.0 285.35 0.00 1 0.00 0.00 _ZNK13PeptideString9geneCountEv [142] Index by function name [123] _GLOBAL__I_TargetOr [24] _ZN4GeneC1EP13Pepti [76] _ZN8MaterialC2EPKc [124] _GLOBAL__I__ZN10Chr [59] _ZN4GeneC1ERS_i [73] _ZN8MaterialC2Ed [125] _GLOBAL__I__ZN12Pro [111] _ZN4ListIP7ProteinE [50] _ZN8MaterialpLERKS_ [126] _GLOBAL__I__ZN13Pep [33] _ZN4ListIP8Organism [10] _ZN8Organism20calcu [127] _GLOBAL__I__ZN4Date [115] _ZN5EnVar11setDefau [11] _ZN8Organism21calcu [128] _GLOBAL__I__ZN6Seri [114] _ZN5EnVar7datalogER [37] _ZN8Organism3dieEv [129] _GLOBAL__I__ZN6Vect [116] _ZN5EnVarC1ERKS_ [3] _ZN8Organism4liveEv [130] _GLOBAL__I__ZN6z1_R [113] _ZN6VectorIdE17expa [51] _ZN8Organism7datalo [131] _GLOBAL__I__ZN8Base [12] _ZN6VectorIdE7newda [39] _ZN8Organism8dltrai [132] _GLOBAL__I__ZN8Loca [7] _ZN6VectorIdEC2ERKS [42] _ZN8OrganismC1ER10C [133] _GLOBAL__I__ZN8Mate [6] _ZN6VectorIdEC2Eid [20] _ZN8OrganismC1ERS_P [134] _GLOBAL__I__ZN8Posi [62] _ZN6VectorIdED2Ev [61] _ZN8OrganismD1Ev [135] _GLOBAL__I__ZlsRSoR [117] _ZN6VectorIdEaSERKS [53] _ZN8Position5moveEE [136] _GLOBAL__I__ZlsRSoR [58] _ZN6VectorIdEnwEm [54] _ZN8Position5moveNE [137] _GLOBAL__I_sfn [18] _ZN6z1_Rnd4Gen1Ev [45] _ZN8Position5moveSE [38] _Z5parsePcRSo [74] _ZN7ProteinC1ERS_ [47] _ZN8Position5moveWE [48] _Z7datalogi [63] _ZN7ProteinD1Ev [5] _ZN8Reaction12equil [56] _ZN10Chromosome14ne [29] _ZN8BaseList6length [4] _ZN8Reaction5reactE [16] _ZN10Chromosome9fin [52] _ZN8BaseList6remove [112] _ZN9Literator5reset [65] _ZN10ChromosomeC1EP [46] _ZN8BaseList7prepen [44] _ZN9Literator6getOn [19] _ZN10ChromosomeC1ER [21] _ZN8Location11remov [141] _ZN9LiteratorC1Ev [15] _ZN12Protopeptide6e [8] _ZN8Location11updat [142] _ZNK13PeptideString [27] _ZN12Protopeptide6l [22] _ZN8Location14bioma [67] _ZNK13PeptideString [26] _ZN13BiotaIterator7 [68] _ZN8Location15resou [34] _ZNK8MaterialmlEd [72] _ZN13PeptideString1 [49] _ZN8Location17calcu [60] _ZNK8MaterialplERKS [31] _ZN13PeptideString1 [40] _ZN8Location8WorldP [121] _ZlsRSoRK4Date [119] _ZN13PeptideString1 [13] _ZN8Location9decomp [122] _ZlsRSoRK8Material [120] _ZN13PeptideString1 [41] _ZN8Location9update [1] main [138] _ZN13PeptideString4 [14] _ZN8Material14total [66] yy_get_next_buffer [28] _ZN13PeptideString5 [9] _ZN8Material16excha [64] yy_get_previous_sta [118] _ZN13PeptideString8 [75] _ZN8Material16parti [17] yylex [70] _ZN13PeptideString8 [55] _ZN8Material7datalo [35] yyparse [71] _ZN13PeptideStringD [30] _ZN8MaterialC1EPK13 [36] [139] _ZN13ReactionTable1 [23] _ZN8MaterialC1EPKc [43] [140] _ZN13ReactionTableC [25] _ZN8MaterialC1Ed [69] _ZN3Urn4drawEv [57] _ZN8MaterialC2EPK13