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Week 3

 This week went by well. The highlights from this week are as follows. On Monday, Lenore gave us (including  a few members of the ECE department) our first biology lecture. She gave an overview of the central dogma of biology (the process in which information from DNA is transcripted to RNA which is then translated into proteins) and went over other basic concepts. I also finished my program for arranging the DSD matrices. On Tuesday, I decided to look at the converged, arranged DSD matrices of graphs with five nodes to see if I could find any patterns. I looked at the three non-isomorphic trees and also began looking at the other eighteen matrices (corresponding to non-disjoint graphs on five vertices). I spent most of Wednesday doing this as well. I got a better picture of what my goal was: Can the arranged DSD matrix tell us anything about the topology of the network? Lenore gave me some guidance and told me to start looking at paths vs. complete graphs.  On Wednesday evening, Lenore invited us for a board game night at her house. This was a great way for all of us to bond and get to known one another outside the workplace. We had another group meeting on Thursday. This time, there was our group of six students, Donna's group of three, as well as Dr. Anselm Blumer and his two students. Each of us went around and introduced ourselves along with a brief description of what we were working on. After the meeting, I began to look at the converged, arranged DSD matrices for trees, complete graphs, and cycles for 3, 4, 5, and 6 - noded graphs. I noticed a pattern for complete graphs, so came up with a hypothesis and predicted what the matrix would look like for 7, 8, 9, and 10-noded graphs. These were validated by the program. The claim is as follows:All complete graphs have converged, arranged DSD matrices of the form: Let there be a complete graph of n-nodes. The claim is that  k is the sum of the reciprocals of the triangular numbers up to the triangular number corresponding to that with base n-1. In other terms, k = 1 + 1/3 + 1/6 + 1/10 + 1/15 + ... + 1/r where r corresponds to triangular number with base n-1. On Friday, I began to see if I could prove this. But realized  I wasn't splitting my day 50/50, so I put this project on hold and went back to the Python project. I have realized I haven't explained the project too much, so I will do so now. Basically I have a list of proteins and functionalities. I am to split the list into two and erase the functionalities of one of the sets. Then, I am supposed to predict these functionalities by examining the connections the unknown nodes have to known ones and their functionalities. On the weekend, I spent some time with Faith and finally ended up watching Wonder Woman. It was good, but Faith and I came to the conclusion that  it could have used a little bit of proof-reading.