Flat profile: Each sample counts as 0.01 seconds. % cumulative self self total time seconds seconds calls ms/call ms/call name 44.66 90.04 90.04 7584610 0.01 0.02 Reaction::react(double, Material &) 29.35 149.20 59.16 361224 0.16 0.53 Organism::live(void) 21.16 191.85 42.65 20654354 0.00 0.00 Reaction::equilibriumP(Material &) 2.63 197.15 5.30 277506 0.02 0.02 Organism::calculateEfficiencies(void) 0.56 198.27 1.12 36673 0.03 0.03 Material::totalDecompose(void) 0.42 199.12 0.85 276658 0.00 0.02 Organism::calculateUptakeRates(void) 0.29 199.70 0.58 998 0.58 1.71 Location::decompose(void) 0.19 200.09 0.39 1295097 0.00 0.00 z1_Rnd::Gen1(void) 0.13 200.36 0.27 yylex 0.11 200.59 0.23 708138 0.00 0.00 BiotaIterator::getNext(void) 0.10 200.80 0.21 72000 0.00 0.00 BaseList::length(void) 0.05 200.90 0.10 999 0.10 6.56 Location::updateShare(void) 0.04 200.98 0.08 2 40.00 44.05 Location::biomassSummary(int) 0.03 201.05 0.07 148368 0.00 0.00 PeptideString::match(PeptideString *, int) 0.03 201.11 0.06 110852 0.00 0.00 Literator::getOne(void) 0.03 201.17 0.06 35964 0.00 0.00 Location::updateEnv(void) 0.02 201.22 0.05 3204 0.02 0.02 Material::Material(PeptideString const *) 0.02 201.27 0.05 1796 0.03 0.03 Organism::dltraits(ostream &) 0.02 201.32 0.05 main 0.02 201.36 0.04 271896 0.00 0.00 BaseList::prepend(void *) 0.02 201.40 0.04 262754 0.00 0.00 Location::removeBiota(Organism *) 0.02 201.44 0.04 71928 0.00 0.00 Location::calculateModifier(int) 0.02 201.48 0.04 1589 0.03 0.03 Material::Material(char const *) 0.01 201.50 0.02 1796 0.01 0.04 Organism::datalog(ostream &) 0.01 201.52 0.02 1588 0.01 0.11 Chromosome::Chromosome(Chromosome &, double) 0.01 201.54 0.02 yyparse 0.00 201.55 0.01 271445 0.00 0.00 BaseList::remove(void *) 0.00 201.56 0.01 2682 0.00 0.00 PeptideString::mutateOnce(mutret_t &) 0.00 201.57 0.01 2048 0.00 0.00 Material::datalog(ostream &) 0.00 201.58 0.01 439 0.02 0.04 Organism::die(void) 0.00 201.59 0.01 108 0.09 0.25 Organism::Organism(Chromosome &, Material &, int, int, char) 0.00 201.60 0.01 yy_get_previous_state 0.00 201.60 0.00 65142 0.00 0.00 Vector::operator[](int) const 0.00 201.60 0.00 21714 0.00 0.00 Vector::rangecheck(int) const 0.00 201.60 0.00 2780 0.00 0.00 PeptideString::rChar(void) 0.00 201.60 0.00 2268 0.00 0.00 PeptideString::subString(int, int) const 0.00 201.60 0.00 2250 0.00 0.05 Gene::Gene(PeptideString *, int, int, int, int) 0.00 201.60 0.00 2248 0.00 0.03 Protopeptide::lookup(PeptideString *, short *, int *) 0.00 201.60 0.00 2248 0.00 0.00 PeptideString::skipGene(char *, int) 0.00 201.60 0.00 1998 0.00 0.00 Literator::Literator(void) 0.00 201.60 0.00 1774 0.00 0.00 Material::~Material(void) 0.00 201.60 0.00 1034 0.00 0.00 Material::Material(Material &) 0.00 201.60 0.00 1001 0.00 0.11 Location::WorldPop(void) 0.00 201.60 0.00 999 0.00 0.00 Literator::reset(void) 0.00 201.60 0.00 740 0.00 0.00 Vector::~Vector(void) 0.00 201.60 0.00 740 0.00 0.00 Material::Material(float) 0.00 201.60 0.00 740 0.00 0.00 Material::operator=(Material const &) 0.00 201.60 0.00 740 0.00 0.00 Chromosome::nextGeneOffset(int) 0.00 201.60 0.00 517 0.00 0.00 Material::operator+=(Material const &) 0.00 201.60 0.00 517 0.00 0.00 Material::operator+(Material const &) const 0.00 201.60 0.00 439 0.00 0.00 Organism::~Organism(void) 0.00 201.60 0.00 252 0.00 0.00 EnVar::datalog(ostream &) 0.00 201.60 0.00 31 0.00 0.00 PeptideString::nextGene(char **) 0.00 201.60 0.00 20 0.00 0.00 PeptideString::prependGene(PeptideString *) 0.00 201.60 0.00 15 0.00 0.00 PeptideString::replaceGene(int, int, PeptideString *) 0.00 201.60 0.00 8 0.00 0.00 operator<<(ostream &, Date const &) 0.00 201.60 0.00 7 0.00 0.00 operator<<(ostream &, Material const &) 0.00 201.60 0.00 7 0.00 11.52 datalog(int) 0.00 201.60 0.00 2 0.00 0.00 HandleINT 0.00 201.60 0.00 2 0.00 0.00 __static_initialization_and_destruction_0 0.00 201.60 0.00 2 0.00 0.00 PeptideString::insert(PeptideString *, int) 0.00 201.60 0.00 2 0.00 0.03 Location::resourceSummary(int) 0.00 201.60 0.00 2 0.00 0.00 PeptideString::split(int) 0.00 201.60 0.00 1 0.00 0.00 z1_Rnd::~z1_Rnd(void) 0.00 201.60 0.00 1 0.00 1.47 Chromosome::Chromosome(char *) 0.00 201.60 0.00 1 0.00 0.00 operator<<(ostream &, PeptideString const &) 0.00 201.60 0.00 1 0.00 0.00 __static_initialization_and_destruction_0 0.00 201.60 0.00 1 0.00 0.00 __static_initialization_and_destruction_0 0.00 201.60 0.00 1 0.00 44.18 epilogue(char *) 0.00 201.60 0.00 1 0.00 0.00 PeptideString::geneCount(void) const 0.00 201.60 0.00 1 0.00 0.00 PeptideString::init(int) 0.00 201.60 0.00 1 0.00 28.08 parse(char *, ostream &) 0.00 201.60 0.00 1 0.00 0.03 Material::partialDecompose(double) % the percentage of the total running time of the time program used by this function. cumulative a running sum of the number of seconds accounted seconds for by this function and those listed above it. self the number of seconds accounted for by this seconds function alone. This is the major sort for this listing. calls the number of times this function was invoked, if this function is profiled, else blank. self the average number of milliseconds spent in this ms/call function per call, if this function is profiled, else blank. total the average number of milliseconds spent in this ms/call function and its descendents per call, if this function is profiled, else blank. name the name of the function. This is the minor sort for this listing. The index shows the location of the function in the gprof listing. If the index is in parenthesis it shows where it would appear in the gprof listing if it were to be printed. Call graph (explanation follows) granularity: each sample hit covers 4 byte(s) for 0.00% of 201.60 seconds index % time self children called name [1] 99.9 0.05 201.25 main [1] 59.16 133.37 361224/361224 Organism::live(void) [2] 0.10 6.45 999/999 Location::updateShare(void) [5] 0.58 1.13 998/998 Location::decompose(void) [8] 0.13 0.00 397188/708138 BiotaIterator::getNext(void) [12] 0.00 0.10 1000/1001 Location::WorldPop(void) [15] 0.00 0.08 7/7 datalog(int) [20] 0.00 0.04 1/1 epilogue(char *) [27] 0.04 0.00 1/2 Location::biomassSummary(int) [19] 0.02 0.01 36963/110852 Literator::getOne(void) [18] 0.00 0.03 1/1 parse(char *, ostream &) [31] 0.00 0.00 1/2 Location::resourceSummary(int) [41] 0.00 0.00 13608/65142 Vector::operator[](int) const [126] 0.00 0.00 999/999 Literator::reset(void) [46] 0.00 0.00 1/1 PeptideString::init(int) [56] 0.00 0.00 1/7 operator<<(ostream &, Material const &) [137] 0.00 0.00 1/1998 Literator::Literator(void) [127] ----------------------------------------------- 59.16 133.37 361224/361224 main [1] [2] 95.5 59.16 133.37 361224 Organism::live(void) [2] 90.04 42.65 7584610/7584610 Reaction::react(double, Material &) [3] 0.35 0.00 1171246/1295097 z1_Rnd::Gen1(void) [10] 0.02 0.15 1480/1588 Chromosome::Chromosome(Chromosome &, double) [14] 0.04 0.01 262315/262754 Location::removeBiota(Organism *) [26] 0.04 0.00 263055/271896 BaseList::prepend(void *) [30] 0.02 0.00 740/36673 Material::totalDecompose(void) [9] 0.01 0.01 439/439 Organism::die(void) [34] 0.00 0.01 740/276658 Organism::calculateUptakeRates(void) [6] 0.01 0.00 740/277506 Organism::calculateEfficiencies(void) [7] 0.00 0.00 740/740 Vector::~Vector(void) [130] 0.00 0.00 740/740 Material::Material(float) [131] 0.00 0.00 740/740 Material::operator=(Material const &) [132] 0.00 0.00 740/1774 Material::~Material(void) [128] 0.00 0.00 740/740 Chromosome::nextGeneOffset(int) [47] ----------------------------------------------- 90.04 42.65 7584610/7584610 Organism::live(void) [2] [3] 65.8 90.04 42.65 7584610 Reaction::react(double, Material &) [3] 42.65 0.00 20654354/20654354 Reaction::equilibriumP(Material &) [4] ----------------------------------------------- 42.65 0.00 20654354/20654354 Reaction::react(double, Material &) [3] [4] 21.2 42.65 0.00 20654354 Reaction::equilibriumP(Material &) [4] ----------------------------------------------- 0.10 6.45 999/999 main [1] [5] 3.2 0.10 6.45 999 Location::updateShare(void) [5] 0.85 5.27 275810/276658 Organism::calculateUptakeRates(void) [6] 0.10 0.00 35964/72000 BaseList::length(void) [13] 0.10 0.00 308902/708138 BiotaIterator::getNext(void) [12] 0.06 0.04 35964/35964 Location::updateEnv(void) [17] 0.02 0.01 36963/110852 Literator::getOne(void) [18] 0.00 0.00 999/1998 Literator::Literator(void) [127] ----------------------------------------------- 0.00 0.00 108/276658 Organism::Organism(Chromosome &, Material &, int, int, char) [32] 0.00 0.01 740/276658 Organism::live(void) [2] 0.85 5.27 275810/276658 Location::updateShare(void) [5] [6] 3.0 0.85 5.28 276658 Organism::calculateUptakeRates(void) [6] 5.28 0.00 276658/277506 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- 0.00 0.00 108/277506 Organism::Organism(Chromosome &, Material &, int, int, char) [32] 0.01 0.00 740/277506 Organism::live(void) [2] 5.28 0.00 276658/277506 Organism::calculateUptakeRates(void) [6] [7] 2.6 5.30 0.00 277506 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- 0.58 1.13 998/998 main [1] [8] 0.8 0.58 1.13 998 Location::decompose(void) [8] 1.10 0.00 35928/36673 Material::totalDecompose(void) [9] 0.02 0.01 36926/110852 Literator::getOne(void) [18] 0.00 0.00 8691/271445 BaseList::remove(void *) [36] 0.00 0.00 998/1998 Literator::Literator(void) [127] ----------------------------------------------- 0.00 0.00 1/36673 Location::biomassSummary(int) [19] 0.00 0.00 1/36673 parse(char *, ostream &) [31] 0.00 0.00 1/36673 Material::partialDecompose(double) [42] 0.00 0.00 2/36673 Location::resourceSummary(int) [41] 0.02 0.00 740/36673 Organism::live(void) [2] 1.10 0.00 35928/36673 Location::decompose(void) [8] [9] 0.6 1.12 0.00 36673 Material::totalDecompose(void) [9] ----------------------------------------------- 0.00 0.00 2780/1295097 PeptideString::rChar(void) [40] 0.00 0.00 4799/1295097 Chromosome::Chromosome(Chromosome &, double) [14] 0.00 0.00 5420/1295097 PeptideString::mutateOnce(mutret_t &) [35] 0.03 0.00 110852/1295097 Literator::getOne(void) [18] 0.35 0.00 1171246/1295097 Organism::live(void) [2] [10] 0.2 0.39 0.00 1295097 z1_Rnd::Gen1(void) [10] ----------------------------------------------- [11] 0.1 0.27 0.00 yylex [11] ----------------------------------------------- 0.00 0.00 2048/708138 datalog(int) [20] 0.10 0.00 308902/708138 Location::updateShare(void) [5] 0.13 0.00 397188/708138 main [1] [12] 0.1 0.23 0.00 708138 BiotaIterator::getNext(void) [12] ----------------------------------------------- 0.10 0.00 35964/72000 Location::updateShare(void) [5] 0.11 0.00 36036/72000 Location::WorldPop(void) [15] [13] 0.1 0.21 0.00 72000 BaseList::length(void) [13] ----------------------------------------------- 0.00 0.01 108/1588 Organism::Organism(Chromosome &, Material &, int, int, char) [32] 0.02 0.15 1480/1588 Organism::live(void) [2] [14] 0.1 0.02 0.16 1588 Chromosome::Chromosome(Chromosome &, double) [14] 0.00 0.10 2219/2250 Gene::Gene(PeptideString *, int, int, int, int) [16] 0.04 0.00 1588/1589 Material::Material(char const *) [29] 0.01 0.00 2682/2682 PeptideString::mutateOnce(mutret_t &) [35] 0.00 0.00 4799/1295097 z1_Rnd::Gen1(void) [10] 0.00 0.00 20/2268 PeptideString::subString(int, int) const [44] 0.00 0.00 20/20 PeptideString::prependGene(PeptideString *) [50] 0.00 0.00 15/15 PeptideString::replaceGene(int, int, PeptideString *) [51] 0.00 0.00 2/2 PeptideString::split(int) [54] 0.00 0.00 2/2 PeptideString::insert(PeptideString *, int) [53] ----------------------------------------------- 0.00 0.00 1/1001 epilogue(char *) [27] 0.00 0.10 1000/1001 main [1] [15] 0.1 0.00 0.11 1001 Location::WorldPop(void) [15] 0.11 0.00 36036/72000 BaseList::length(void) [13] ----------------------------------------------- 0.00 0.00 31/2250 Chromosome::Chromosome(char *) [39] 0.00 0.10 2219/2250 Chromosome::Chromosome(Chromosome &, double) [14] [16] 0.1 0.00 0.11 2250 Gene::Gene(PeptideString *, int, int, int, int) [16] 0.00 0.07 2248/2248 Protopeptide::lookup(PeptideString *, short *, int *) [23] 0.04 0.00 2248/3204 Material::Material(PeptideString const *) [25] 0.00 0.00 2248/2268 PeptideString::subString(int, int) const [44] ----------------------------------------------- 0.06 0.04 35964/35964 Location::updateShare(void) [5] [17] 0.0 0.06 0.04 35964 Location::updateEnv(void) [17] 0.04 0.00 71928/71928 Location::calculateModifier(int) [28] ----------------------------------------------- 0.02 0.01 36926/110852 Location::decompose(void) [8] 0.02 0.01 36963/110852 Location::updateShare(void) [5] 0.02 0.01 36963/110852 main [1] [18] 0.0 0.06 0.03 110852 Literator::getOne(void) [18] 0.03 0.00 110852/1295097 z1_Rnd::Gen1(void) [10] ----------------------------------------------- 0.04 0.00 1/2 epilogue(char *) [27] 0.04 0.00 1/2 main [1] [19] 0.0 0.08 0.01 2 Location::biomassSummary(int) [19] 0.01 0.00 517/3204 Material::Material(PeptideString const *) [25] 0.00 0.00 1/36673 Material::totalDecompose(void) [9] 0.00 0.00 21714/21714 Vector::rangecheck(int) const [43] 0.00 0.00 1034/1034 Material::Material(Material &) [129] 0.00 0.00 1034/1774 Material::~Material(void) [128] 0.00 0.00 517/517 Material::operator+(Material const &) const [134] 0.00 0.00 517/517 Material::operator+=(Material const &) [133] ----------------------------------------------- 0.00 0.08 7/7 main [1] [20] 0.0 0.00 0.08 7 datalog(int) [20] 0.02 0.06 1796/1796 Organism::datalog(ostream &) [21] 0.00 0.00 252/2048 Material::datalog(ostream &) [37] 0.00 0.00 2048/708138 BiotaIterator::getNext(void) [12] 0.00 0.00 252/252 EnVar::datalog(ostream &) [48] 0.00 0.00 7/8 operator<<(ostream &, Date const &) [136] ----------------------------------------------- 0.02 0.06 1796/1796 datalog(int) [20] [21] 0.0 0.02 0.06 1796 Organism::datalog(ostream &) [21] 0.05 0.00 1796/1796 Organism::dltraits(ostream &) [24] 0.01 0.00 1796/2048 Material::datalog(ostream &) [37] ----------------------------------------------- 0.07 0.00 148368/148368 Protopeptide::lookup(PeptideString *, short *, int *) [23] [22] 0.0 0.07 0.00 148368 PeptideString::match(PeptideString *, int) [22] ----------------------------------------------- 0.00 0.07 2248/2248 Gene::Gene(PeptideString *, int, int, int, int) [16] [23] 0.0 0.00 0.07 2248 Protopeptide::lookup(PeptideString *, short *, int *) [23] 0.07 0.00 148368/148368 PeptideString::match(PeptideString *, int) [22] 0.00 0.00 2248/2248 PeptideString::skipGene(char *, int) [45] ----------------------------------------------- 0.05 0.00 1796/1796 Organism::datalog(ostream &) [21] [24] 0.0 0.05 0.00 1796 Organism::dltraits(ostream &) [24] ----------------------------------------------- 0.01 0.00 439/3204 Organism::die(void) [34] 0.01 0.00 517/3204 Location::biomassSummary(int) [19] 0.04 0.00 2248/3204 Gene::Gene(PeptideString *, int, int, int, int) [16] [25] 0.0 0.05 0.00 3204 Material::Material(PeptideString const *) [25] ----------------------------------------------- 0.00 0.00 439/262754 Organism::die(void) [34] 0.04 0.01 262315/262754 Organism::live(void) [2] [26] 0.0 0.04 0.01 262754 Location::removeBiota(Organism *) [26] 0.01 0.00 262754/271445 BaseList::remove(void *) [36] ----------------------------------------------- 0.00 0.04 1/1 main [1] [27] 0.0 0.00 0.04 1 epilogue(char *) [27] 0.04 0.00 1/2 Location::biomassSummary(int) [19] 0.00 0.00 1/1001 Location::WorldPop(void) [15] 0.00 0.00 1/2 Location::resourceSummary(int) [41] 0.00 0.00 51534/65142 Vector::operator[](int) const [126] 0.00 0.00 2/7 operator<<(ostream &, Material const &) [137] 0.00 0.00 1/8 operator<<(ostream &, Date const &) [136] ----------------------------------------------- 0.04 0.00 71928/71928 Location::updateEnv(void) [17] [28] 0.0 0.04 0.00 71928 Location::calculateModifier(int) [28] ----------------------------------------------- 0.00 0.00 1/1589 Chromosome::Chromosome(char *) [39] 0.04 0.00 1588/1589 Chromosome::Chromosome(Chromosome &, double) [14] [29] 0.0 0.04 0.00 1589 Material::Material(char const *) [29] ----------------------------------------------- 0.00 0.00 108/271896 parse(char *, ostream &) [31] 0.00 0.00 8733/271896 Organism::die(void) [34] 0.04 0.00 263055/271896 Organism::live(void) [2] [30] 0.0 0.04 0.00 271896 BaseList::prepend(void *) [30] ----------------------------------------------- 0.00 0.03 1/1 main [1] [31] 0.0 0.00 0.03 1 parse(char *, ostream &) [31] 0.01 0.02 108/108 Organism::Organism(Chromosome &, Material &, int, int, char) [32] 0.00 0.00 1/1 Chromosome::Chromosome(char *) [39] 0.00 0.00 1/36673 Material::totalDecompose(void) [9] 0.00 0.00 1/1 Material::partialDecompose(double) [42] 0.00 0.00 108/271896 BaseList::prepend(void *) [30] 0.00 0.00 31/31 PeptideString::nextGene(char **) [49] 0.00 0.00 4/7 operator<<(ostream &, Material const &) [137] ----------------------------------------------- 0.01 0.02 108/108 parse(char *, ostream &) [31] [32] 0.0 0.01 0.02 108 Organism::Organism(Chromosome &, Material &, int, int, char) [32] 0.00 0.01 108/1588 Chromosome::Chromosome(Chromosome &, double) [14] 0.00 0.00 108/276658 Organism::calculateUptakeRates(void) [6] 0.00 0.00 108/277506 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- [33] 0.0 0.02 0.00 yyparse [33] ----------------------------------------------- 0.01 0.01 439/439 Organism::live(void) [2] [34] 0.0 0.01 0.01 439 Organism::die(void) [34] 0.01 0.00 439/3204 Material::Material(PeptideString const *) [25] 0.00 0.00 8733/271896 BaseList::prepend(void *) [30] 0.00 0.00 439/262754 Location::removeBiota(Organism *) [26] 0.00 0.00 439/439 Organism::~Organism(void) [135] ----------------------------------------------- 0.01 0.00 2682/2682 Chromosome::Chromosome(Chromosome &, double) [14] [35] 0.0 0.01 0.00 2682 PeptideString::mutateOnce(mutret_t &) [35] 0.00 0.00 5420/1295097 z1_Rnd::Gen1(void) [10] 0.00 0.00 2780/2780 PeptideString::rChar(void) [40] ----------------------------------------------- 0.00 0.00 8691/271445 Location::decompose(void) [8] 0.01 0.00 262754/271445 Location::removeBiota(Organism *) [26] [36] 0.0 0.01 0.00 271445 BaseList::remove(void *) [36] ----------------------------------------------- 0.00 0.00 252/2048 datalog(int) [20] 0.01 0.00 1796/2048 Organism::datalog(ostream &) [21] [37] 0.0 0.01 0.00 2048 Material::datalog(ostream &) [37] ----------------------------------------------- [38] 0.0 0.01 0.00 yy_get_previous_state [38] ----------------------------------------------- 0.00 0.00 1/1 parse(char *, ostream &) [31] [39] 0.0 0.00 0.00 1 Chromosome::Chromosome(char *) [39] 0.00 0.00 31/2250 Gene::Gene(PeptideString *, int, int, int, int) [16] 0.00 0.00 1/1589 Material::Material(char const *) [29] 0.00 0.00 1/1 PeptideString::geneCount(void) const [55] ----------------------------------------------- 0.00 0.00 2780/2780 PeptideString::mutateOnce(mutret_t &) [35] [40] 0.0 0.00 0.00 2780 PeptideString::rChar(void) [40] 0.00 0.00 2780/1295097 z1_Rnd::Gen1(void) [10] ----------------------------------------------- 0.00 0.00 1/2 epilogue(char *) [27] 0.00 0.00 1/2 main [1] [41] 0.0 0.00 0.00 2 Location::resourceSummary(int) [41] 0.00 0.00 2/36673 Material::totalDecompose(void) [9] ----------------------------------------------- 0.00 0.00 1/1 parse(char *, ostream &) [31] [42] 0.0 0.00 0.00 1 Material::partialDecompose(double) [42] 0.00 0.00 1/36673 Material::totalDecompose(void) [9] ----------------------------------------------- 0.00 0.00 21714/21714 Location::biomassSummary(int) [19] [43] 0.0 0.00 0.00 21714 Vector::rangecheck(int) const [43] ----------------------------------------------- 0.00 0.00 20/2268 Chromosome::Chromosome(Chromosome &, double) [14] 0.00 0.00 2248/2268 Gene::Gene(PeptideString *, int, int, int, int) [16] [44] 0.0 0.00 0.00 2268 PeptideString::subString(int, int) const [44] ----------------------------------------------- 0.00 0.00 2248/2248 Protopeptide::lookup(PeptideString *, short *, int *) [23] [45] 0.0 0.00 0.00 2248 PeptideString::skipGene(char *, int) [45] ----------------------------------------------- 0.00 0.00 999/999 main [1] [46] 0.0 0.00 0.00 999 Literator::reset(void) [46] ----------------------------------------------- 0.00 0.00 740/740 Organism::live(void) [2] [47] 0.0 0.00 0.00 740 Chromosome::nextGeneOffset(int) [47] ----------------------------------------------- 0.00 0.00 252/252 datalog(int) [20] [48] 0.0 0.00 0.00 252 EnVar::datalog(ostream &) [48] ----------------------------------------------- 0.00 0.00 31/31 parse(char *, ostream &) [31] [49] 0.0 0.00 0.00 31 PeptideString::nextGene(char **) [49] ----------------------------------------------- 0.00 0.00 20/20 Chromosome::Chromosome(Chromosome &, double) [14] [50] 0.0 0.00 0.00 20 PeptideString::prependGene(PeptideString *) [50] ----------------------------------------------- 0.00 0.00 15/15 Chromosome::Chromosome(Chromosome &, double) [14] [51] 0.0 0.00 0.00 15 PeptideString::replaceGene(int, int, PeptideString *) [51] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [151] 0.00 0.00 1/2 __do_global_ctors_aux [150] [52] 0.0 0.00 0.00 2 HandleINT [52] 0.00 0.00 2/2 __static_initialization_and_destruction_0 [138] ----------------------------------------------- 0.00 0.00 2/2 Chromosome::Chromosome(Chromosome &, double) [14] [53] 0.0 0.00 0.00 2 PeptideString::insert(PeptideString *, int) [53] ----------------------------------------------- 0.00 0.00 2/2 Chromosome::Chromosome(Chromosome &, double) [14] [54] 0.0 0.00 0.00 2 PeptideString::split(int) [54] ----------------------------------------------- 0.00 0.00 1/1 Chromosome::Chromosome(char *) [39] [55] 0.0 0.00 0.00 1 PeptideString::geneCount(void) const [55] ----------------------------------------------- 0.00 0.00 1/1 main [1] [56] 0.0 0.00 0.00 1 PeptideString::init(int) [56] ----------------------------------------------- 0.00 0.00 13608/65142 main [1] 0.00 0.00 51534/65142 epilogue(char *) [27] [126] 0.0 0.00 0.00 65142 Vector::operator[](int) const [126] ----------------------------------------------- 0.00 0.00 1/1998 main [1] 0.00 0.00 998/1998 Location::decompose(void) [8] 0.00 0.00 999/1998 Location::updateShare(void) [5] [127] 0.0 0.00 0.00 1998 Literator::Literator(void) [127] ----------------------------------------------- 0.00 0.00 740/1774 Organism::live(void) [2] 0.00 0.00 1034/1774 Location::biomassSummary(int) [19] [128] 0.0 0.00 0.00 1774 Material::~Material(void) [128] ----------------------------------------------- 0.00 0.00 1034/1034 Location::biomassSummary(int) [19] [129] 0.0 0.00 0.00 1034 Material::Material(Material &) [129] ----------------------------------------------- 0.00 0.00 740/740 Organism::live(void) [2] [130] 0.0 0.00 0.00 740 Vector::~Vector(void) [130] ----------------------------------------------- 0.00 0.00 740/740 Organism::live(void) [2] [131] 0.0 0.00 0.00 740 Material::Material(float) [131] ----------------------------------------------- 0.00 0.00 740/740 Organism::live(void) [2] [132] 0.0 0.00 0.00 740 Material::operator=(Material const &) [132] ----------------------------------------------- 0.00 0.00 517/517 Location::biomassSummary(int) [19] [133] 0.0 0.00 0.00 517 Material::operator+=(Material const &) [133] ----------------------------------------------- 0.00 0.00 517/517 Location::biomassSummary(int) [19] [134] 0.0 0.00 0.00 517 Material::operator+(Material const &) const [134] ----------------------------------------------- 0.00 0.00 439/439 Organism::die(void) [34] [135] 0.0 0.00 0.00 439 Organism::~Organism(void) [135] ----------------------------------------------- 0.00 0.00 1/8 epilogue(char *) [27] 0.00 0.00 7/8 datalog(int) [20] [136] 0.0 0.00 0.00 8 operator<<(ostream &, Date const &) [136] ----------------------------------------------- 0.00 0.00 1/7 main [1] 0.00 0.00 2/7 epilogue(char *) [27] 0.00 0.00 4/7 parse(char *, ostream &) [31] [137] 0.0 0.00 0.00 7 operator<<(ostream &, Material const &) [137] ----------------------------------------------- 0.00 0.00 2/2 HandleINT [52] [138] 0.0 0.00 0.00 2 __static_initialization_and_destruction_0 [138] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [150] [139] 0.0 0.00 0.00 1 z1_Rnd::~z1_Rnd(void) [139] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [150] [140] 0.0 0.00 0.00 1 operator<<(ostream &, PeptideString const &) [140] 0.00 0.00 1/1 __static_initialization_and_destruction_0 [141] ----------------------------------------------- 0.00 0.00 1/1 operator<<(ostream &, PeptideString const &) [140] [141] 0.0 0.00 0.00 1 __static_initialization_and_destruction_0 [141] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [150] [142] 0.0 0.00 0.00 1 __static_initialization_and_destruction_0 [142] ----------------------------------------------- This table describes the call tree of the program, and was sorted by the total amount of time spent in each function and its children. Each entry in this table consists of several lines. The line with the index number at the left hand margin lists the current function. The lines above it list the functions that called this function, and the lines below it list the functions this one called. This line lists: index A unique number given to each element of the table. Index numbers are sorted numerically. The index number is printed next to every function name so it is easier to look up where the function in the table. % time This is the percentage of the `total' time that was spent in this function and its children. Note that due to different viewpoints, functions excluded by options, etc, these numbers will NOT add up to 100%. self This is the total amount of time spent in this function. children This is the total amount of time propagated into this function by its children. called This is the number of times the function was called. If the function called itself recursively, the number only includes non-recursive calls, and is followed by a `+' and the number of recursive calls. name The name of the current function. The index number is printed after it. If the function is a member of a cycle, the cycle number is printed between the function's name and the index number. For the function's parents, the fields have the following meanings: self This is the amount of time that was propagated directly from the function into this parent. children This is the amount of time that was propagated from the function's children into this parent. called This is the number of times this parent called the function `/' the total number of times the function was called. Recursive calls to the function are not included in the number after the `/'. name This is the name of the parent. The parent's index number is printed after it. If the parent is a member of a cycle, the cycle number is printed between the name and the index number. If the parents of the function cannot be determined, the word `' is printed in the `name' field, and all the other fields are blank. For the function's children, the fields have the following meanings: self This is the amount of time that was propagated directly from the child into the function. children This is the amount of time that was propagated from the child's children to the function. called This is the number of times the function called this child `/' the total number of times the child was called. Recursive calls by the child are not listed in the number after the `/'. name This is the name of the child. The child's index number is printed after it. If the child is a member of a cycle, the cycle number is printed between the name and the index number. If there are any cycles (circles) in the call graph, there is an entry for the cycle-as-a-whole. This entry shows who called the cycle (as parents) and the members of the cycle (as children.) The `+' recursive calls entry shows the number of function calls that were internal to the cycle, and the calls entry for each member shows, for that member, how many times it was called from other members of the cycle. Index by function name [10] z1_Rnd::Gen1(void) [126] Vector::operator[](int) const [47] Chromosome::nextGeneOffset(int) [52] HandleINT [19] Location::biomassSummary(int) [49] PeptideString::nextGene(char **) [15] Location::WorldPop(void) [7] Organism::calculateEfficiencies(void) [31] parse(char *, ostream &) [139] z1_Rnd::~z1_Rnd(void) [28] Location::calculateModifier(int) [42] Material::partialDecompose(double) [128] Material::~Material(void) [6] Organism::calculateUptakeRates(void) [50] PeptideString::prependGene(PeptideString *) [135] Organism::~Organism(void) [48] EnVar::datalog(ostream &) [30] BaseList::prepend(void *) [130] Vector::~Vector(void) [37] Material::datalog(ostream &) [40] PeptideString::rChar(void) [39] Chromosome::Chromosome(char *) [21] Organism::datalog(ostream &) [43] Vector::rangecheck(int) const [14] Chromosome::Chromosome(Chromosome &, double) [20] datalog(int) [3] Reaction::react(double, Material &) [16] Gene::Gene(PeptideString *, int, int, int, int) [8] Location::decompose(void) [26] Location::removeBiota(Organism *) [25] Material::Material(PeptideString const *) [34] Organism::die(void) [36] BaseList::remove(void *) [29] Material::Material(char const *) [24] Organism::dltraits(ostream &) [51] PeptideString::replaceGene(int, int, PeptideString *) [129] Material::Material(Material &) [27] epilogue(char *) [46] Literator::reset(void) [131] Material::Material(float) [4] Reaction::equilibriumP(Material &) [41] Location::resourceSummary(int) [32] Organism::Organism(Chromosome &, Material &, int, int, char) [55] PeptideString::geneCount(void) const [45] PeptideString::skipGene(char *, int) [127] Literator::Literator(void) [12] BiotaIterator::getNext(void) [54] PeptideString::split(int) [133] Material::operator+=(Material const &) [18] Literator::getOne(void) [44] PeptideString::subString(int, int) const [132] Material::operator=(Material const &) [56] PeptideString::init(int) [9] Material::totalDecompose(void) [140] operator<<(ostream &, PeptideString const &) [53] PeptideString::insert(PeptideString *, int) [17] Location::updateEnv(void) [136] operator<<(ostream &, Date const &) [13] BaseList::length(void) [5] Location::updateShare(void) [137] operator<<(ostream &, Material const &) [2] Organism::live(void) [38] yy_get_previous_state (lex.yy.c) [134] Material::operator+(Material const &) const [23] Protopeptide::lookup(PeptideString *, short *, int *) [11] yylex [138] __static_initialization_and_destruction_0 (mylist.h) [1] main [33] yyparse [141] __static_initialization_and_destruction_0 (peptidestring.C) [22] PeptideString::match(PeptideString *, int) [142] __static_initialization_and_destruction_0 (random.C) [35] PeptideString::mutateOnce(mutret_t &)