Flat profile: Each sample counts as 0.01 seconds. % cumulative self self total time seconds seconds calls us/call us/call name 52.77 230.37 230.37 7721011 29.84 43.01 Reaction::react(double, Material &) 23.30 332.10 101.73 21149483 4.81 4.81 Reaction::equilibriumP(Material &) 21.23 424.78 92.68 368941 251.21 1154.43 Organism::live(void) 1.18 429.92 5.14 283037 18.16 18.16 Organism::calculateEfficiencies(void) 0.50 432.12 2.20 36676 59.98 59.98 Material::totalDecompose(void) 0.27 433.32 1.20 282186 4.25 22.41 Organism::calculateUptakeRates(void) 0.25 434.41 1.09 998 1092.18 3283.40 Location::decompose(void) 0.11 434.90 0.49 1317945 0.37 0.37 z1_Rnd::Gen1(void) 0.06 435.18 0.28 999 280.28 6779.92 Location::updateShare(void) 0.03 435.31 0.13 yylex 0.03 435.43 0.12 721414 0.17 0.17 BiotaIterator::getNext(void) 0.03 435.55 0.12 1595 75.24 75.24 Material::Material(char const *) 0.03 435.66 0.11 266827 0.41 0.56 Location::removeBiota(Organism *) 0.03 435.77 0.11 72000 1.53 1.53 BaseList::length(void) 0.03 435.88 0.11 3251 33.84 33.84 Material::Material(PeptideString const *) 0.02 435.98 0.10 2 50000.00 58505.85 Location::biomassSummary(int) 0.02 436.07 0.09 151273 0.59 0.59 PeptideString::match(PeptideString *, int) 0.01 436.13 0.06 276369 0.22 0.22 BaseList::prepend(void *) 0.01 436.19 0.06 2696 22.26 22.26 Urn::reset(void) 0.01 436.25 0.06 1822 32.93 32.93 Organism::dltraits(ostream &) 0.01 436.31 0.06 main 0.01 436.36 0.05 110852 0.45 0.82 Literator::getOne(void) 0.01 436.41 0.05 yyparse 0.01 436.45 0.04 275890 0.14 0.14 BaseList::remove(void *) 0.01 436.48 0.03 71928 0.42 0.42 Location::calculateModifier(int) 0.00 436.50 0.02 35964 0.56 1.39 Location::updateEnv(void) 0.00 436.52 0.02 2696 7.42 30.81 PeptideString::mutateOnce(mutret_t &) 0.00 436.54 0.02 1594 12.55 257.09 Chromosome::Chromosome(Chromosome &, double) 0.00 436.55 0.01 2292 4.36 47.99 Protopeptide::lookup(PeptideString *, short *, int *) 0.00 436.56 0.01 2292 4.36 4.36 PeptideString::skipGene(char *, int) 0.00 436.57 0.01 458 21.83 60.56 Organism::die(void) 0.00 436.58 0.01 108 92.59 390.25 Organism::Organism(Chromosome &, Material &, int, int, char) 0.00 436.59 0.01 1 10000.00 54902.61 parse(char *, ostream &) 0.00 436.59 0.00 11254 0.00 0.00 Position::moveW(int, int) 0.00 436.59 0.00 10704 0.00 0.00 Position::moveE(int, int) 0.00 436.59 0.00 2797 0.00 0.37 PeptideString::rChar(void) 0.00 436.59 0.00 2305 0.00 0.00 PeptideString::subString(int, int) const 0.00 436.59 0.00 2292 0.00 81.83 Gene::Gene(PeptideString *, int, int, int, int) 0.00 436.59 0.00 2074 0.00 0.00 Material::datalog(ostream &) 0.00 436.59 0.00 1998 0.00 0.00 Literator::Literator(void) 0.00 436.59 0.00 1822 0.00 32.93 Organism::datalog(ostream &) 0.00 436.59 0.00 1001 0.00 55.00 Location::WorldPop(void) 0.00 436.59 0.00 999 0.00 0.00 Literator::reset(void) 0.00 436.59 0.00 458 0.00 0.00 Organism::~Organism(void) 0.00 436.59 0.00 252 0.00 0.00 EnVar::datalog(ostream &) 0.00 436.59 0.00 36 0.00 0.00 Location::operator=(Location const &) 0.00 436.59 0.00 36 0.00 0.00 EnVar::setDefaults(double *) 0.00 436.59 0.00 31 0.00 0.00 PeptideString::nextGene(char **) 0.00 436.59 0.00 22 0.00 0.00 PeptideString::replaceGene(int, int, PeptideString *) 0.00 436.59 0.00 13 0.00 0.00 PeptideString::prependGene(PeptideString *) 0.00 436.59 0.00 8 0.00 0.00 operator<<(ostream &, Date const &) 0.00 436.59 0.00 7 0.00 0.00 operator<<(ostream &, Material const &) 0.00 436.59 0.00 7 0.00 8620.71 datalog(int) 0.00 436.59 0.00 2 0.00 0.00 HandleINT 0.00 436.59 0.00 2 0.00 0.00 __static_initialization_and_destruction_0 0.00 436.59 0.00 2 0.00 59.98 Location::resourceSummary(int) 0.00 436.59 0.00 1 0.00 0.00 z1_Rnd::~z1_Rnd(void) 0.00 436.59 0.00 1 0.00 2611.92 Chromosome::Chromosome(char *) 0.00 436.59 0.00 1 0.00 0.00 __static_initialization_and_destruction_0 0.00 436.59 0.00 1 0.00 0.00 __static_initialization_and_destruction_0 0.00 436.59 0.00 1 0.00 58620.83 epilogue(char *) 0.00 436.59 0.00 1 0.00 0.00 PeptideString::geneCount(void) const 0.00 436.59 0.00 1 0.00 0.00 PeptideString::init(int) 0.00 436.59 0.00 1 0.00 59.98 Material::partialDecompose(double) % the percentage of the total running time of the time program used by this function. cumulative a running sum of the number of seconds accounted seconds for by this function and those listed above it. self the number of seconds accounted for by this seconds function alone. This is the major sort for this listing. calls the number of times this function was invoked, if this function is profiled, else blank. self the average number of milliseconds spent in this ms/call function per call, if this function is profiled, else blank. total the average number of milliseconds spent in this ms/call function and its descendents per call, if this function is profiled, else blank. name the name of the function. This is the minor sort for this listing. The index shows the location of the function in the gprof listing. If the index is in parenthesis it shows where it would appear in the gprof listing if it were to be printed. Call graph (explanation follows) granularity: each sample hit covers 4 byte(s) for 0.00% of 436.59 seconds index % time self children called name [1] 100.0 0.06 436.35 main [1] 92.68 333.23 368941/368941 Organism::live(void) [2] 0.28 6.49 999/999 Location::updateShare(void) [5] 1.09 2.19 998/998 Location::decompose(void) [8] 0.07 0.00 404905/721414 BiotaIterator::getNext(void) [15] 0.00 0.06 7/7 datalog(int) [24] 0.00 0.06 1/1 epilogue(char *) [29] 0.05 0.01 1/2 Location::biomassSummary(int) [17] 0.00 0.06 1000/1001 Location::WorldPop(void) [30] 0.01 0.04 1/1 parse(char *, ostream &) [31] 0.02 0.01 36963/110852 Literator::getOne(void) [21] 0.00 0.00 1/2 Location::resourceSummary(int) [41] 0.00 0.00 999/999 Literator::reset(void) [48] 0.00 0.00 1/7 operator<<(ostream &, Material const &) [148] 0.00 0.00 1/1998 Literator::Literator(void) [144] ----------------------------------------------- 92.68 333.23 368941/368941 main [1] [2] 97.6 92.68 333.23 368941 Organism::live(void) [2] 230.37 101.73 7721011/7721011 Reaction::react(double, Material &) [3] 0.44 0.00 1194027/1317945 z1_Rnd::Gen1(void) [10] 0.02 0.36 1486/1594 Chromosome::Chromosome(Chromosome &, double) [11] 0.11 0.04 266369/266827 Location::removeBiota(Organism *) [13] 0.06 0.00 267112/276369 BaseList::prepend(void *) [28] 0.04 0.00 743/36676 Material::totalDecompose(void) [9] 0.01 0.02 458/458 Organism::die(void) [37] 0.00 0.01 743/282186 Organism::calculateUptakeRates(void) [6] 0.01 0.00 743/283037 Organism::calculateEfficiencies(void) [7] 0.00 0.00 11254/11254 Position::moveW(int, int) [44] 0.00 0.00 10704/10704 Position::moveE(int, int) [45] ----------------------------------------------- 230.37 101.73 7721011/7721011 Organism::live(void) [2] [3] 76.1 230.37 101.73 7721011 Reaction::react(double, Material &) [3] 101.73 0.00 21149483/21149483 Reaction::equilibriumP(Material &) [4] ----------------------------------------------- 101.73 0.00 21149483/21149483 Reaction::react(double, Material &) [3] [4] 23.3 101.73 0.00 21149483 Reaction::equilibriumP(Material &) [4] ----------------------------------------------- 0.28 6.49 999/999 main [1] [5] 1.6 0.28 6.49 999 Location::updateShare(void) [5] 1.20 5.11 281335/282186 Organism::calculateUptakeRates(void) [6] 0.05 0.00 35964/72000 BaseList::length(void) [18] 0.05 0.00 314435/721414 BiotaIterator::getNext(void) [15] 0.02 0.03 35964/35964 Location::updateEnv(void) [32] 0.02 0.01 36963/110852 Literator::getOne(void) [21] 0.00 0.00 999/1998 Literator::Literator(void) [144] ----------------------------------------------- 0.00 0.00 108/282186 Organism::Organism(Chromosome &, Material &, int, int, char) [34] 0.00 0.01 743/282186 Organism::live(void) [2] 1.20 5.11 281335/282186 Location::updateShare(void) [5] [6] 1.4 1.20 5.12 282186 Organism::calculateUptakeRates(void) [6] 5.12 0.00 282186/283037 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- 0.00 0.00 108/283037 Organism::Organism(Chromosome &, Material &, int, int, char) [34] 0.01 0.00 743/283037 Organism::live(void) [2] 5.12 0.00 282186/283037 Organism::calculateUptakeRates(void) [6] [7] 1.2 5.14 0.00 283037 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- 1.09 2.19 998/998 main [1] [8] 0.8 1.09 2.19 998 Location::decompose(void) [8] 2.16 0.00 35928/36676 Material::totalDecompose(void) [9] 0.02 0.01 36926/110852 Literator::getOne(void) [21] 0.00 0.00 9063/275890 BaseList::remove(void *) [35] 0.00 0.00 998/1998 Literator::Literator(void) [144] ----------------------------------------------- 0.00 0.00 1/36676 Location::biomassSummary(int) [17] 0.00 0.00 1/36676 parse(char *, ostream &) [31] 0.00 0.00 1/36676 Material::partialDecompose(double) [42] 0.00 0.00 2/36676 Location::resourceSummary(int) [41] 0.04 0.00 743/36676 Organism::live(void) [2] 2.16 0.00 35928/36676 Location::decompose(void) [8] [9] 0.5 2.20 0.00 36676 Material::totalDecompose(void) [9] ----------------------------------------------- 0.00 0.00 2797/1317945 PeptideString::rChar(void) [40] 0.00 0.00 4817/1317945 Chromosome::Chromosome(Chromosome &, double) [11] 0.00 0.00 5452/1317945 PeptideString::mutateOnce(mutret_t &) [23] 0.04 0.00 110852/1317945 Literator::getOne(void) [21] 0.44 0.00 1194027/1317945 Organism::live(void) [2] [10] 0.1 0.49 0.00 1317945 z1_Rnd::Gen1(void) [10] ----------------------------------------------- 0.00 0.03 108/1594 Organism::Organism(Chromosome &, Material &, int, int, char) [34] 0.02 0.36 1486/1594 Organism::live(void) [2] [11] 0.1 0.02 0.39 1594 Chromosome::Chromosome(Chromosome &, double) [11] 0.00 0.19 2261/2292 Gene::Gene(PeptideString *, int, int, int, int) [12] 0.12 0.00 1594/1595 Material::Material(char const *) [16] 0.02 0.06 2696/2696 PeptideString::mutateOnce(mutret_t &) [23] 0.00 0.00 4817/1317945 z1_Rnd::Gen1(void) [10] 0.00 0.00 22/22 PeptideString::replaceGene(int, int, PeptideString *) [52] 0.00 0.00 13/2305 PeptideString::subString(int, int) const [46] 0.00 0.00 13/13 PeptideString::prependGene(PeptideString *) [53] ----------------------------------------------- 0.00 0.00 31/2292 Chromosome::Chromosome(char *) [39] 0.00 0.19 2261/2292 Chromosome::Chromosome(Chromosome &, double) [11] [12] 0.0 0.00 0.19 2292 Gene::Gene(PeptideString *, int, int, int, int) [12] 0.01 0.10 2292/2292 Protopeptide::lookup(PeptideString *, short *, int *) [20] 0.08 0.00 2292/3251 Material::Material(PeptideString const *) [19] 0.00 0.00 2292/2305 PeptideString::subString(int, int) const [46] ----------------------------------------------- 0.00 0.00 458/266827 Organism::die(void) [37] 0.11 0.04 266369/266827 Organism::live(void) [2] [13] 0.0 0.11 0.04 266827 Location::removeBiota(Organism *) [13] 0.04 0.00 266827/275890 BaseList::remove(void *) [35] ----------------------------------------------- [14] 0.0 0.13 0.00 yylex [14] ----------------------------------------------- 0.00 0.00 2074/721414 datalog(int) [24] 0.05 0.00 314435/721414 Location::updateShare(void) [5] 0.07 0.00 404905/721414 main [1] [15] 0.0 0.12 0.00 721414 BiotaIterator::getNext(void) [15] ----------------------------------------------- 0.00 0.00 1/1595 Chromosome::Chromosome(char *) [39] 0.12 0.00 1594/1595 Chromosome::Chromosome(Chromosome &, double) [11] [16] 0.0 0.12 0.00 1595 Material::Material(char const *) [16] ----------------------------------------------- 0.05 0.01 1/2 epilogue(char *) [29] 0.05 0.01 1/2 main [1] [17] 0.0 0.10 0.02 2 Location::biomassSummary(int) [17] 0.02 0.00 501/3251 Material::Material(PeptideString const *) [19] 0.00 0.00 1/36676 Material::totalDecompose(void) [9] ----------------------------------------------- 0.05 0.00 35964/72000 Location::updateShare(void) [5] 0.06 0.00 36036/72000 Location::WorldPop(void) [30] [18] 0.0 0.11 0.00 72000 BaseList::length(void) [18] ----------------------------------------------- 0.02 0.00 458/3251 Organism::die(void) [37] 0.02 0.00 501/3251 Location::biomassSummary(int) [17] 0.08 0.00 2292/3251 Gene::Gene(PeptideString *, int, int, int, int) [12] [19] 0.0 0.11 0.00 3251 Material::Material(PeptideString const *) [19] ----------------------------------------------- 0.01 0.10 2292/2292 Gene::Gene(PeptideString *, int, int, int, int) [12] [20] 0.0 0.01 0.10 2292 Protopeptide::lookup(PeptideString *, short *, int *) [20] 0.09 0.00 151272/151273 PeptideString::match(PeptideString *, int) [22] 0.01 0.00 2292/2292 PeptideString::skipGene(char *, int) [38] ----------------------------------------------- 0.02 0.01 36926/110852 Location::decompose(void) [8] 0.02 0.01 36963/110852 Location::updateShare(void) [5] 0.02 0.01 36963/110852 main [1] [21] 0.0 0.05 0.04 110852 Literator::getOne(void) [21] 0.04 0.00 110852/1317945 z1_Rnd::Gen1(void) [10] ----------------------------------------------- 0.00 0.00 1/151273 __do_global_ctors_aux [43] 0.09 0.00 151272/151273 Protopeptide::lookup(PeptideString *, short *, int *) [20] [22] 0.0 0.09 0.00 151273 PeptideString::match(PeptideString *, int) [22] 0.00 0.00 1/1 __static_initialization_and_destruction_0 [151] ----------------------------------------------- 0.02 0.06 2696/2696 Chromosome::Chromosome(Chromosome &, double) [11] [23] 0.0 0.02 0.06 2696 PeptideString::mutateOnce(mutret_t &) [23] 0.06 0.00 2696/2696 Urn::reset(void) [25] 0.00 0.00 5452/1317945 z1_Rnd::Gen1(void) [10] 0.00 0.00 2797/2797 PeptideString::rChar(void) [40] ----------------------------------------------- 0.00 0.06 7/7 main [1] [24] 0.0 0.00 0.06 7 datalog(int) [24] 0.00 0.06 1822/1822 Organism::datalog(ostream &) [26] 0.00 0.00 2074/721414 BiotaIterator::getNext(void) [15] 0.00 0.00 252/252 EnVar::datalog(ostream &) [49] 0.00 0.00 252/2074 Material::datalog(ostream &) [47] 0.00 0.00 7/8 operator<<(ostream &, Date const &) [147] ----------------------------------------------- 0.06 0.00 2696/2696 PeptideString::mutateOnce(mutret_t &) [23] [25] 0.0 0.06 0.00 2696 Urn::reset(void) [25] ----------------------------------------------- 0.00 0.06 1822/1822 datalog(int) [24] [26] 0.0 0.00 0.06 1822 Organism::datalog(ostream &) [26] 0.06 0.00 1822/1822 Organism::dltraits(ostream &) [27] 0.00 0.00 1822/2074 Material::datalog(ostream &) [47] ----------------------------------------------- 0.06 0.00 1822/1822 Organism::datalog(ostream &) [26] [27] 0.0 0.06 0.00 1822 Organism::dltraits(ostream &) [27] ----------------------------------------------- 0.00 0.00 108/276369 parse(char *, ostream &) [31] 0.00 0.00 9149/276369 Organism::die(void) [37] 0.06 0.00 267112/276369 Organism::live(void) [2] [28] 0.0 0.06 0.00 276369 BaseList::prepend(void *) [28] ----------------------------------------------- 0.00 0.06 1/1 main [1] [29] 0.0 0.00 0.06 1 epilogue(char *) [29] 0.05 0.01 1/2 Location::biomassSummary(int) [17] 0.00 0.00 1/2 Location::resourceSummary(int) [41] 0.00 0.00 1/1001 Location::WorldPop(void) [30] 0.00 0.00 2/7 operator<<(ostream &, Material const &) [148] 0.00 0.00 1/8 operator<<(ostream &, Date const &) [147] ----------------------------------------------- 0.00 0.00 1/1001 epilogue(char *) [29] 0.00 0.06 1000/1001 main [1] [30] 0.0 0.00 0.06 1001 Location::WorldPop(void) [30] 0.06 0.00 36036/72000 BaseList::length(void) [18] ----------------------------------------------- 0.01 0.04 1/1 main [1] [31] 0.0 0.01 0.04 1 parse(char *, ostream &) [31] 0.01 0.03 108/108 Organism::Organism(Chromosome &, Material &, int, int, char) [34] 0.00 0.00 1/1 Chromosome::Chromosome(char *) [39] 0.00 0.00 1/36676 Material::totalDecompose(void) [9] 0.00 0.00 1/1 Material::partialDecompose(double) [42] 0.00 0.00 108/276369 BaseList::prepend(void *) [28] 0.00 0.00 36/36 EnVar::setDefaults(double *) [50] 0.00 0.00 36/36 Location::operator=(Location const &) [146] 0.00 0.00 4/7 operator<<(ostream &, Material const &) [148] 0.00 0.00 1/1 PeptideString::init(int) [56] ----------------------------------------------- 0.02 0.03 35964/35964 Location::updateShare(void) [5] [32] 0.0 0.02 0.03 35964 Location::updateEnv(void) [32] 0.03 0.00 71928/71928 Location::calculateModifier(int) [36] ----------------------------------------------- [33] 0.0 0.05 0.00 yyparse [33] ----------------------------------------------- 0.01 0.03 108/108 parse(char *, ostream &) [31] [34] 0.0 0.01 0.03 108 Organism::Organism(Chromosome &, Material &, int, int, char) [34] 0.00 0.03 108/1594 Chromosome::Chromosome(Chromosome &, double) [11] 0.00 0.00 108/282186 Organism::calculateUptakeRates(void) [6] 0.00 0.00 108/283037 Organism::calculateEfficiencies(void) [7] ----------------------------------------------- 0.00 0.00 9063/275890 Location::decompose(void) [8] 0.04 0.00 266827/275890 Location::removeBiota(Organism *) [13] [35] 0.0 0.04 0.00 275890 BaseList::remove(void *) [35] ----------------------------------------------- 0.03 0.00 71928/71928 Location::updateEnv(void) [32] [36] 0.0 0.03 0.00 71928 Location::calculateModifier(int) [36] ----------------------------------------------- 0.01 0.02 458/458 Organism::live(void) [2] [37] 0.0 0.01 0.02 458 Organism::die(void) [37] 0.02 0.00 458/3251 Material::Material(PeptideString const *) [19] 0.00 0.00 9149/276369 BaseList::prepend(void *) [28] 0.00 0.00 458/266827 Location::removeBiota(Organism *) [13] 0.00 0.00 458/458 Organism::~Organism(void) [145] ----------------------------------------------- 0.01 0.00 2292/2292 Protopeptide::lookup(PeptideString *, short *, int *) [20] [38] 0.0 0.01 0.00 2292 PeptideString::skipGene(char *, int) [38] ----------------------------------------------- 0.00 0.00 1/1 parse(char *, ostream &) [31] [39] 0.0 0.00 0.00 1 Chromosome::Chromosome(char *) [39] 0.00 0.00 31/2292 Gene::Gene(PeptideString *, int, int, int, int) [12] 0.00 0.00 1/1595 Material::Material(char const *) [16] 0.00 0.00 31/31 PeptideString::nextGene(char **) [51] 0.00 0.00 1/1 PeptideString::geneCount(void) const [55] ----------------------------------------------- 0.00 0.00 2797/2797 PeptideString::mutateOnce(mutret_t &) [23] [40] 0.0 0.00 0.00 2797 PeptideString::rChar(void) [40] 0.00 0.00 2797/1317945 z1_Rnd::Gen1(void) [10] ----------------------------------------------- 0.00 0.00 1/2 epilogue(char *) [29] 0.00 0.00 1/2 main [1] [41] 0.0 0.00 0.00 2 Location::resourceSummary(int) [41] 0.00 0.00 2/36676 Material::totalDecompose(void) [9] ----------------------------------------------- 0.00 0.00 1/1 parse(char *, ostream &) [31] [42] 0.0 0.00 0.00 1 Material::partialDecompose(double) [42] 0.00 0.00 1/36676 Material::totalDecompose(void) [9] ----------------------------------------------- [43] 0.0 0.00 0.00 __do_global_ctors_aux [43] 0.00 0.00 1/151273 PeptideString::match(PeptideString *, int) [22] 0.00 0.00 1/2 HandleINT [54] 0.00 0.00 1/1 z1_Rnd::~z1_Rnd(void) [150] ----------------------------------------------- 0.00 0.00 11254/11254 Organism::live(void) [2] [44] 0.0 0.00 0.00 11254 Position::moveW(int, int) [44] ----------------------------------------------- 0.00 0.00 10704/10704 Organism::live(void) [2] [45] 0.0 0.00 0.00 10704 Position::moveE(int, int) [45] ----------------------------------------------- 0.00 0.00 13/2305 Chromosome::Chromosome(Chromosome &, double) [11] 0.00 0.00 2292/2305 Gene::Gene(PeptideString *, int, int, int, int) [12] [46] 0.0 0.00 0.00 2305 PeptideString::subString(int, int) const [46] ----------------------------------------------- 0.00 0.00 252/2074 datalog(int) [24] 0.00 0.00 1822/2074 Organism::datalog(ostream &) [26] [47] 0.0 0.00 0.00 2074 Material::datalog(ostream &) [47] ----------------------------------------------- 0.00 0.00 999/999 main [1] [48] 0.0 0.00 0.00 999 Literator::reset(void) [48] ----------------------------------------------- 0.00 0.00 252/252 datalog(int) [24] [49] 0.0 0.00 0.00 252 EnVar::datalog(ostream &) [49] ----------------------------------------------- 0.00 0.00 36/36 parse(char *, ostream &) [31] [50] 0.0 0.00 0.00 36 EnVar::setDefaults(double *) [50] ----------------------------------------------- 0.00 0.00 31/31 Chromosome::Chromosome(char *) [39] [51] 0.0 0.00 0.00 31 PeptideString::nextGene(char **) [51] ----------------------------------------------- 0.00 0.00 22/22 Chromosome::Chromosome(Chromosome &, double) [11] [52] 0.0 0.00 0.00 22 PeptideString::replaceGene(int, int, PeptideString *) [52] ----------------------------------------------- 0.00 0.00 13/13 Chromosome::Chromosome(Chromosome &, double) [11] [53] 0.0 0.00 0.00 13 PeptideString::prependGene(PeptideString *) [53] ----------------------------------------------- 0.00 0.00 1/2 __do_global_dtors_aux [160] 0.00 0.00 1/2 __do_global_ctors_aux [43] [54] 0.0 0.00 0.00 2 HandleINT [54] 0.00 0.00 2/2 __static_initialization_and_destruction_0 [149] ----------------------------------------------- 0.00 0.00 1/1 Chromosome::Chromosome(char *) [39] [55] 0.0 0.00 0.00 1 PeptideString::geneCount(void) const [55] ----------------------------------------------- 0.00 0.00 1/1 parse(char *, ostream &) [31] [56] 0.0 0.00 0.00 1 PeptideString::init(int) [56] ----------------------------------------------- 0.00 0.00 1/1998 main [1] 0.00 0.00 998/1998 Location::decompose(void) [8] 0.00 0.00 999/1998 Location::updateShare(void) [5] [144] 0.0 0.00 0.00 1998 Literator::Literator(void) [144] ----------------------------------------------- 0.00 0.00 458/458 Organism::die(void) [37] [145] 0.0 0.00 0.00 458 Organism::~Organism(void) [145] ----------------------------------------------- 0.00 0.00 36/36 parse(char *, ostream &) [31] [146] 0.0 0.00 0.00 36 Location::operator=(Location const &) [146] ----------------------------------------------- 0.00 0.00 1/8 epilogue(char *) [29] 0.00 0.00 7/8 datalog(int) [24] [147] 0.0 0.00 0.00 8 operator<<(ostream &, Date const &) [147] ----------------------------------------------- 0.00 0.00 1/7 main [1] 0.00 0.00 2/7 epilogue(char *) [29] 0.00 0.00 4/7 parse(char *, ostream &) [31] [148] 0.0 0.00 0.00 7 operator<<(ostream &, Material const &) [148] ----------------------------------------------- 0.00 0.00 2/2 HandleINT [54] [149] 0.0 0.00 0.00 2 __static_initialization_and_destruction_0 [149] ----------------------------------------------- 0.00 0.00 1/1 __do_global_ctors_aux [43] [150] 0.0 0.00 0.00 1 z1_Rnd::~z1_Rnd(void) [150] 0.00 0.00 1/1 __static_initialization_and_destruction_0 [152] ----------------------------------------------- 0.00 0.00 1/1 PeptideString::match(PeptideString *, int) [22] [151] 0.0 0.00 0.00 1 __static_initialization_and_destruction_0 [151] ----------------------------------------------- 0.00 0.00 1/1 z1_Rnd::~z1_Rnd(void) [150] [152] 0.0 0.00 0.00 1 __static_initialization_and_destruction_0 [152] ----------------------------------------------- This table describes the call tree of the program, and was sorted by the total amount of time spent in each function and its children. Each entry in this table consists of several lines. The line with the index number at the left hand margin lists the current function. The lines above it list the functions that called this function, and the lines below it list the functions this one called. This line lists: index A unique number given to each element of the table. Index numbers are sorted numerically. The index number is printed next to every function name so it is easier to look up where the function in the table. % time This is the percentage of the `total' time that was spent in this function and its children. Note that due to different viewpoints, functions excluded by options, etc, these numbers will NOT add up to 100%. self This is the total amount of time spent in this function. children This is the total amount of time propagated into this function by its children. called This is the number of times the function was called. If the function called itself recursively, the number only includes non-recursive calls, and is followed by a `+' and the number of recursive calls. name The name of the current function. The index number is printed after it. If the function is a member of a cycle, the cycle number is printed between the function's name and the index number. For the function's parents, the fields have the following meanings: self This is the amount of time that was propagated directly from the function into this parent. children This is the amount of time that was propagated from the function's children into this parent. called This is the number of times this parent called the function `/' the total number of times the function was called. Recursive calls to the function are not included in the number after the `/'. name This is the name of the parent. The parent's index number is printed after it. If the parent is a member of a cycle, the cycle number is printed between the name and the index number. If the parents of the function cannot be determined, the word `' is printed in the `name' field, and all the other fields are blank. For the function's children, the fields have the following meanings: self This is the amount of time that was propagated directly from the child into the function. children This is the amount of time that was propagated from the child's children to the function. called This is the number of times the function called this child `/' the total number of times the child was called. Recursive calls by the child are not listed in the number after the `/'. name This is the name of the child. The child's index number is printed after it. If the child is a member of a cycle, the cycle number is printed between the name and the index number. If there are any cycles (circles) in the call graph, there is an entry for the cycle-as-a-whole. This entry shows who called the cycle (as parents) and the members of the cycle (as children.) The `+' recursive calls entry shows the number of function calls that were internal to the cycle, and the calls entry for each member shows, for that member, how many times it was called from other members of the cycle. Index by function name [10] z1_Rnd::Gen1(void) [49] EnVar::datalog(ostream &) [31] parse(char *, ostream &) [54] HandleINT [47] Material::datalog(ostream &) [42] Material::partialDecompose(double) [30] Location::WorldPop(void) [26] Organism::datalog(ostream &) [53] PeptideString::prependGene(PeptideString *) [150] z1_Rnd::~z1_Rnd(void) [24] datalog(int) [28] BaseList::prepend(void *) [145] Organism::~Organism(void) [8] Location::decompose(void) [40] PeptideString::rChar(void) [39] Chromosome::Chromosome(char *) [37] Organism::die(void) [3] Reaction::react(double, Material &) [11] Chromosome::Chromosome(Chromosome &, double) [27] Organism::dltraits(ostream &) [13] Location::removeBiota(Organism *) [12] Gene::Gene(PeptideString *, int, int, int, int) [29] epilogue(char *) [35] BaseList::remove(void *) [19] Material::Material(PeptideString const *) [4] Reaction::equilibriumP(Material &) [52] PeptideString::replaceGene(int, int, PeptideString *) [16] Material::Material(char const *) [55] PeptideString::geneCount(void) const [25] Urn::reset(void) [34] Organism::Organism(Chromosome &, Material &, int, int, char) [15] BiotaIterator::getNext(void) [48] Literator::reset(void) [144] Literator::Literator(void) [21] Literator::getOne(void) [41] Location::resourceSummary(int) [146] Location::operator=(Location const &) [56] PeptideString::init(int) [50] EnVar::setDefaults(double *) [147] operator<<(ostream &, Date const &) [18] BaseList::length(void) [38] PeptideString::skipGene(char *, int) [148] operator<<(ostream &, Material const &) [2] Organism::live(void) [46] PeptideString::subString(int, int) const [149] __static_initialization_and_destruction_0 (main.C) [20] Protopeptide::lookup(PeptideString *, short *, int *) [9] Material::totalDecompose(void) [151] __static_initialization_and_destruction_0 (peptidestring.C) [1] main [32] Location::updateEnv(void) [152] __static_initialization_and_destruction_0 (random.C) [22] PeptideString::match(PeptideString *, int) [5] Location::updateShare(void) [17] Location::biomassSummary(int) [45] Position::moveE(int, int) [14] yylex [7] Organism::calculateEfficiencies(void) [44] Position::moveW(int, int) [33] yyparse [36] Location::calculateModifier(int) [23] PeptideString::mutateOnce(mutret_t &) [6] Organism::calculateUptakeRates(void) [51] PeptideString::nextGene(char **)